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秀丽隐杆线虫对硫化氢的全球转录反应。

The global transcriptional response of fission yeast to hydrogen sulfide.

机构信息

Institute of Biomedical Science, Fudan University, Shanghai, China.

出版信息

PLoS One. 2011;6(12):e28275. doi: 10.1371/journal.pone.0028275. Epub 2011 Dec 2.

DOI:10.1371/journal.pone.0028275
PMID:22164259
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3229568/
Abstract

BACKGROUND

Hydrogen sulfide (H(2)S) is a newly identified member of the small family of gasotransmitters that are endogenous gaseous signaling molecules that have a fundamental role in human biology and disease. Although it is a relatively recent discovery and the mechanism of H(2)S activity is not completely understood, it is known to be involved in a number of cellular processes; H(2)S can affect ion channels, transcription factors and protein kinases in mammals.

METHODOLOGY/PRINCIPAL FINDINGS: In this paper, we have used fission yeast as a model organism to study the global gene expression profile in response to H(2)S by microarray. We initially measured the genome-wide transcriptional response of fission yeast to H(2)S. Through the functional classification of genes whose expression profile changed in response to H(2)S, we found that H(2)S mainly influences genes that encode putative or known stress proteins, membrane transporters, cell cycle/meiotic proteins, transcription factors and respiration protein in the mitochondrion. Our analysis showed that there was a significant overlap between the genes affected by H(2)S and the stress response. We identified that the target genes of the MAPK pathway respond to H(2)S; we also identified that a number of transporters respond to H(2)S, these include sugar/carbohydrate transporters, ion transporters, and amino acid transporters. We found many mitochondrial genes to be down regulated upon H(2)S treatment and that H(2)S can reduce mitochondrial oxygen consumption.

CONCLUSION/SIGNIFICANCE: This study identifies potential molecular targets of the signaling molecule H(2)S in fission yeast and provides clues about the identity of homologues human proteins and will further the understanding of the cellular role of H(2)S in human diseases.

摘要

背景

硫化氢 (H(2)S) 是一种新发现的气体信号分子家族成员,该家族的其他成员也是内源性气态信号分子,它们在人类生物学和疾病中起着至关重要的作用。尽管 H(2)S 是一个相对较新的发现,其活性机制尚未完全阐明,但已知它参与了许多细胞过程;H(2)S 可以影响哺乳动物中的离子通道、转录因子和蛋白激酶。

方法/主要发现:在本文中,我们使用裂殖酵母作为模型生物,通过微阵列研究了 H(2)S 对其的全基因组表达谱的影响。我们最初测量了裂殖酵母对 H(2)S 的全基因组转录反应。通过对响应 H(2)S 而改变表达谱的基因进行功能分类,我们发现 H(2)S 主要影响编码假定或已知应激蛋白、膜转运蛋白、细胞周期/减数分裂蛋白、转录因子和线粒体呼吸蛋白的基因。我们的分析表明,受 H(2)S 影响的基因与应激反应之间存在显著重叠。我们确定了 MAPK 途径的靶基因对 H(2)S 有反应;我们还发现许多转运体对 H(2)S 有反应,包括糖/碳水化合物转运体、离子转运体和氨基酸转运体。我们发现许多线粒体基因在 H(2)S 处理后下调,并且 H(2)S 可以降低线粒体耗氧量。

结论/意义:本研究鉴定了裂殖酵母中信号分子 H(2)S 的潜在分子靶标,并提供了有关同源人类蛋白身份的线索,将进一步加深我们对 H(2)S 在人类疾病中细胞作用的理解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fd3f/3229568/9df42cec3562/pone.0028275.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fd3f/3229568/d7813d80755d/pone.0028275.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fd3f/3229568/295a521f077e/pone.0028275.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fd3f/3229568/a1721178cd2c/pone.0028275.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fd3f/3229568/9df42cec3562/pone.0028275.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fd3f/3229568/d7813d80755d/pone.0028275.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fd3f/3229568/295a521f077e/pone.0028275.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fd3f/3229568/a1721178cd2c/pone.0028275.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fd3f/3229568/9df42cec3562/pone.0028275.g004.jpg

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本文引用的文献

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Annu Rev Pharmacol Toxicol. 2011;51:169-87. doi: 10.1146/annurev-pharmtox-010510-100505.
2
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PLoS One. 2010 Jul 16;5(7):e11620. doi: 10.1371/journal.pone.0011620.
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Interaction of hydrogen sulfide with ion channels.硫化氢与离子通道的相互作用。
在应激和培养基响应过程中全面分析裂殖酵母转录起始位点活性。
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Transcriptional response to sulfide in the Echiuran Worm Urechis unicinctus by digital gene expression analysis.通过数字基因表达分析对螠虫单环刺螠中硫化物的转录反应。
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Training set selection for the prediction of essential genes.用于预测必需基因的训练集选择。
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A new computational strategy for predicting essential genes.一种新的预测必需基因的计算策略。
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Hydrogen sulfide induces human colon cancer cell proliferation: role of Akt, ERK and p21.硫化氢诱导人结肠癌细胞增殖: Akt、ERK 和 p21 的作用。
Cell Biol Int. 2010 Apr 14;34(6):565-72. doi: 10.1042/CBI20090368.
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