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协调深度校准和人口历史:贻贝(Nardo,1847)和赤贝(Linnaeus,1758)后冰川期殖民模式的贝叶斯推断。

Reconciling deep calibration and demographic history: bayesian inference of post glacial colonization patterns in Carcinus aestuarii (Nardo, 1847) and C. maenas (Linnaeus, 1758).

机构信息

Department of Biology, University of Padova, Padova, Italy.

出版信息

PLoS One. 2011;6(12):e28567. doi: 10.1371/journal.pone.0028567. Epub 2011 Dec 2.

Abstract

A precise inference of past demographic histories including dating of demographic events using bayesian methods can only be achieved with the use of appropriate molecular rates and evolutionary models. Using a set of 596 mitochondrial cytochrome c oxidase I (COI) sequences of two sister species of European green crabs of the genus Carcinus (C. maenas and C. aestuarii), our study shows how chronologies of past evolutionary events change significantly with the application of revised molecular rates that incorporate biogeographic events for calibration and appropriate demographic priors. A clear signal of demographic expansion was found for both species, dated between 10,000 and 20,000 years ago, which places the expansions events in a time frame following the Last Glacial Maximum (LGM). In the case of C. aestuarii, a population expansion was only inferred for the Adriatic-Ionian, suggestive of a colonization event following the flooding of the Adriatic Sea (18,000 years ago). For C. maenas, the demographic expansion inferred for the continental populations of West and North Europe might result from a northward recolonization from a southern refugium when the ice sheet retreated after the LGM. Collectively, our results highlight the importance of using adequate calibrations and demographic priors in order to avoid considerable overestimates of evolutionary time scales.

摘要

利用贝叶斯方法精确推断过去的人口历史,包括人口事件的日期,只能通过使用适当的分子速率和进化模型来实现。本研究利用欧洲绿蟹属(Carcinus)的两个姐妹种(C. maenas 和 C. aestuarii)的 596 个线粒体细胞色素 c 氧化酶 I(COI)序列,展示了如何通过应用包含生物地理事件校准和适当的人口先验的修订分子速率,来改变过去进化事件的年代表。这两个物种都显示出明显的人口扩张信号,发生在 1 万到 2 万年前,这将扩张事件置于末次冰期最大值(LGM)之后的时间框架内。对于 C. aestuarii,仅在亚得里亚海-爱奥尼亚海推断出种群扩张,表明在亚得里亚海泛滥(18000 年前)之后发生了一次殖民事件。对于 C. maenas,西欧和北欧大陆种群推断出的人口扩张可能是由于冰盖在 LGM 后消退时,从南部避难所向北重新殖民。总的来说,我们的研究结果强调了使用适当的校准和人口先验的重要性,以避免对进化时间尺度的过度估计。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c672/3229605/56e905179272/pone.0028567.g001.jpg

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