Laboratory of Molecular and Cellular Biology, CNRS, Université de Lyon, Ecole Normale Supérieure, Lyon Cedex 07, France.
Genome Biol. 2011 Dec 20;12(12):R123. doi: 10.1186/gb-2011-12-12-r123.
Heterochromatin protein 1 (HP1) family proteins have a well-characterized role in heterochromatin packaging and gene regulation. Their function in organismal development, however, is less well understood. Here we used genome-wide expression profiling to assess novel functions of the Caenorhabditis elegans HP1 homolog HPL-2 at specific developmental stages.
We show that HPL-2 regulates the expression of germline genes, extracellular matrix components and genes involved in lipid metabolism. Comparison of our expression data with HPL-2 ChIP-on-chip profiles reveals that a significant number of genes up- and down-regulated in the absence of HPL-2 are bound by HPL-2. Germline genes are specifically up-regulated in hpl-2 mutants, consistent with the function of HPL-2 as a repressor of ectopic germ cell fate. In addition, microarray results and phenotypic analysis suggest that HPL-2 regulates the dauer developmental decision, a striking example of phenotypic plasticity in which environmental conditions determine developmental fate. HPL-2 acts in dauer at least partly through modulation of daf-2/IIS and TGF-β signaling pathways, major determinants of the dauer program. hpl-2 mutants also show increased longevity and altered lipid metabolism, hallmarks of the long-lived, stress resistant dauers.
Our results suggest that the worm HP1 homologue HPL-2 may coordinately regulate dauer diapause, longevity and lipid metabolism, three processes dependent on developmental input and environmental conditions. Our findings are of general interest as a paradigm of how chromatin factors can both stabilize development by buffering environmental variation, and guide the organism through remodeling events that require plasticity of cell fate regulation.
异染色质蛋白 1(HP1)家族蛋白在异染色质包装和基因调控中具有明确的作用。然而,它们在生物体发育中的功能却知之甚少。在这里,我们使用全基因组表达谱分析来评估秀丽隐杆线虫 HP1 同源物 HPL-2 在特定发育阶段的新功能。
我们表明 HPL-2 调节生殖细胞基因、细胞外基质成分和参与脂质代谢的基因的表达。将我们的表达数据与 HPL-2 ChIP-on-chip 图谱进行比较,结果显示,在没有 HPL-2 的情况下上调和下调的大量基因都与 HPL-2 结合。生殖细胞基因在 hpl-2 突变体中特异性地上调,这与 HPL-2 作为异位生殖细胞命运的抑制剂的功能一致。此外,微阵列结果和表型分析表明,HPL-2 调节 dauer 发育决策,这是表型可塑性的一个显著例子,其中环境条件决定了发育命运。HPL-2 在 dauer 中的作用至少部分是通过调节 daf-2/IIS 和 TGF-β信号通路来实现的,这些信号通路是 dauer 程序的主要决定因素。hpl-2 突变体也表现出寿命延长和脂质代谢改变,这是长寿和应激抵抗 dauer 的标志。
我们的研究结果表明,线虫 HP1 同源物 HPL-2 可能协调调节 dauer 休眠、寿命和脂质代谢,这三个过程都依赖于发育输入和环境条件。我们的研究结果具有普遍意义,为染色质因子如何通过缓冲环境变化来稳定发育,以及通过需要细胞命运调节可塑性的重塑事件来指导生物体提供了范例。