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血红素过氧化氢酶结构生物学三十年。

Thirty years of heme catalases structural biology.

机构信息

Institut de Biologia Molecular de Barcelona (CSIC) and IRB Barcelona, Parc Científic de Barcelona, Baldiri i Reixac 10-12, 08028-Barcelona, Spain.

出版信息

Arch Biochem Biophys. 2012 Sep 15;525(2):102-10. doi: 10.1016/j.abb.2011.12.011. Epub 2011 Dec 23.

Abstract

About thirty years ago the crystal structures of the heme catalases from Penicillium vitale (PVC) and, a few months later, from bovine liver (BLC) were published. Both enzymes were compact tetrameric molecules with subunits that, despite their size differences and the large phylogenetic separation between the two organisms, presented a striking structural similarity for about 460 residues. The high conservation, confirmed in all the subsequent structures determined, suggested a strong pressure to preserve a functional catalase fold, which is almost exclusively found in these mono-functional heme catalases. However, even in the absence of the catalase fold an efficient catalase activity is also found in the heme containing catalase-peroxidase proteins. The structure of these broad substrate range enzymes, reported for the first time less than ten years ago from the halophilic archaebacterium Haloarcula marismortui (HmCPx) and from the bacterium Burkholderia pseudomallei (BpKatG), showed a heme pocket closely related to that of plant peroxidases, though with a number of unique modifications that enable the catalase reaction. Despite the wealth of structural information already available, for both monofunctional catalases and catalase-peroxidases, a number of unanswered major questions require continuing structural research with truly innovative approaches.

摘要

大约三十年前,发表了来自Penicillium vitale(PVC)和几个月后来自牛肝(BLC)的血红素过氧化氢酶的晶体结构。这两种酶都是紧凑的四聚体分子,其亚基尽管大小不同,并且两种生物体之间的系统发育分离很大,但对于约 460 个残基,呈现出惊人的结构相似性。在随后确定的所有结构中均得到确认的高度保守性表明,存在强烈的压力来保留功能过氧化氢酶折叠,而这种折叠几乎仅存在于这些单功能血红素过氧化氢酶中。但是,即使没有过氧化氢酶折叠,在含血红素的过氧化氢酶过氧化物酶蛋白中也发现了有效的过氧化氢酶活性。这些具有广泛底物范围的酶的结构,不到十年前首次从嗜盐古细菌Haloarcula marismortui(HmCPx)和细菌Burkholderia pseudomallei(BpKatG)中报道,显示出与植物过氧化物酶密切相关的血红素口袋,尽管具有许多独特的修饰,可使过氧化氢酶反应得以进行。尽管已经有了丰富的结构信息,对于单功能过氧化氢酶和过氧化氢酶过氧化物酶,仍有许多未解决的重大问题需要通过真正具有创新性的方法继续进行结构研究。

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