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氟:蛋白质设计的新元素。

Fluorine: a new element in protein design.

机构信息

Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, USA.

出版信息

Protein Sci. 2012 Apr;21(4):453-62. doi: 10.1002/pro.2030. Epub 2012 Feb 14.

DOI:10.1002/pro.2030
PMID:22274989
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3375745/
Abstract

Fluorocarbons are quintessentially man-made molecules, fluorine being all but absent from biology. Perfluorinated molecules exhibit novel physicochemical properties that include extreme chemical inertness, thermal stability, and an unusual propensity for phase segregation. The question we and others have sought to answer is to what extent can these properties be engineered into proteins? Here, we review recent studies in which proteins have been designed that incorporate highly fluorinated analogs of hydrophobic amino acids with the aim of creating proteins with novel chemical and biological properties. Fluorination seems to be a general and effective strategy to enhance the stability of proteins, both soluble and membrane bound, against chemical and thermal denaturation, although retaining structure and biological activity. Most studies have focused on small proteins that can be produced by peptide synthesis as synthesis of large proteins containing specifically fluorinated residues remains challenging. However, the development of various biosynthetic methods for introducing noncanonical amino acids into proteins promises to expand the utility of fluorinated amino acids in protein design.

摘要

全氟化合物本质上是人造分子,几乎不含生物学中的氟。全氟分子表现出新颖的物理化学性质,包括极端的化学惰性、热稳定性和异常的相分离倾向。我们和其他人一直在努力回答的问题是,在多大程度上可以将这些特性设计到蛋白质中?在这里,我们回顾了最近的研究,这些研究设计了含有高度氟化的疏水性氨基酸类似物的蛋白质,旨在创造具有新型化学和生物学特性的蛋白质。氟化似乎是一种通用且有效的策略,可以增强蛋白质的稳定性,无论是可溶性的还是膜结合的,防止化学和热变性,尽管保留了结构和生物活性。大多数研究都集中在可以通过肽合成生产的小蛋白质上,因为合成含有特定氟化残基的大蛋白质仍然具有挑战性。然而,各种将非典型氨基酸引入蛋白质的生物合成方法的发展有望扩大氟代氨基酸在蛋白质设计中的应用。

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本文引用的文献

1
Fluorinated Coiled-Coil Proteins Prepared In Vivo Display Enhanced Thermal and Chemical Stability.体内制备的氟化卷曲螺旋蛋白表现出增强的热稳定性和化学稳定性。
Angew Chem Int Ed Engl. 2001 Apr 17;40(8):1494-1496. doi: 10.1002/1521-3773(20010417)40:8<1494::AID-ANIE1494>3.0.CO;2-X.
2
Stacked fluoroaromatics as supramolecular synthons for programming protein dimerization specificity.堆叠的氟代芳烃作为用于编程蛋白质二聚化特异性的超分子合成子。
Angew Chem Int Ed Engl. 2012 Jan 2;51(1):103-7. doi: 10.1002/anie.201105857. Epub 2011 Nov 21.
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Using fluorine nuclear magnetic resonance to probe changes in the structure and dynamics of membrane-active peptides interacting with lipid bilayers.利用氟核磁共振探测与脂双层相互作用的膜活性肽的结构和动力学变化。
Biochemistry. 2011 Jul 12;50(27):5979-87. doi: 10.1021/bi200639c. Epub 2011 Jun 15.
4
Highly specific heterodimerization mediated by quadrupole interactions.由四极相互作用介导的高度特异性异源二聚化。
Angew Chem Int Ed Engl. 2010 Nov 8;49(46):8635-9. doi: 10.1002/anie.201002860.
5
Using fluorine nuclear magnetic resonance to probe the interaction of membrane-active peptides with the lipid bilayer.利用氟核磁共振探测膜活性肽与脂质双层的相互作用。
Biochemistry. 2010 Jul 13;49(27):5760-5. doi: 10.1021/bi100605e.
6
Effects of fluorination on the folding kinetics of a heterodimeric coiled coil.氟化对异源二聚体卷曲螺旋折叠动力学的影响。
Chembiochem. 2009 Dec 14;10(18):2867-70. doi: 10.1002/cbic.200900518.
7
Engineering protein stability and specificity using fluorous amino acids: the importance of packing effects.利用含氟氨基酸工程化改造蛋白质稳定性和特异性:堆积效应的重要性
Biochemistry. 2009 Nov 17;48(45):10810-7. doi: 10.1021/bi901481k.
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Effect of highly fluorinated amino acids on protein stability at a solvent-exposed position on an internal strand of protein G B1 domain.高氟化氨基酸对蛋白 G B1 结构域内部链溶剂暴露位置上的蛋白稳定性的影响。
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Proc Natl Acad Sci U S A. 2009 Apr 28;106(17):6968-73. doi: 10.1073/pnas.0811818106. Epub 2009 Apr 9.
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Biosynthesis and stability of coiled-coil peptides containing (2S,4R)-5,5,5-trifluoroleucine and (2S,4S)-5,5,5-trifluoroleucine.含(2S,4R)-5,5,5-三氟亮氨酸和(2S,4S)-5,5,5-三氟亮氨酸的卷曲螺旋肽的生物合成与稳定性
Chembiochem. 2009 Jan 5;10(1):84-6. doi: 10.1002/cbic.200800164.