Suppr超能文献

迈向可互操作的生物科学数据

Toward interoperable bioscience data.

机构信息

Oxford e-Research Centre, University of Oxford, Oxford, UK.

出版信息

Nat Genet. 2012 Jan 27;44(2):121-6. doi: 10.1038/ng.1054.

Abstract

To make full use of research data, the bioscience community needs to adopt technologies and reward mechanisms that support interoperability and promote the growth of an open 'data commoning' culture. Here we describe the prerequisites for data commoning and present an established and growing ecosystem of solutions using the shared 'Investigation-Study-Assay' framework to support that vision.

摘要

为了充分利用研究数据,生命科学界需要采用支持互操作性的技术和奖励机制,并促进开放的“数据共有”文化的发展。在这里,我们描述了数据共有的前提条件,并介绍了一个既定的且不断发展的解决方案生态系统,该系统使用共享的“Investigation-Study-Assay”框架来支持这一愿景。

相似文献

1
Toward interoperable bioscience data.
Nat Genet. 2012 Jan 27;44(2):121-6. doi: 10.1038/ng.1054.
2
It's not about the data.
Nat Genet. 2012 Jan 27;44(2):111. doi: 10.1038/ng.1099.
3
It's 10 pm; Do You Know Where Your Data Are? Data Provenance, Curation, and Storage.
Circ Res. 2017 May 12;120(10):1551-1554. doi: 10.1161/CIRCRESAHA.116.310424.
4
Every home should have one: the critical role of the research librarian.
Br J Gen Pract. 2017 Apr;67(657):174. doi: 10.3399/bjgp17X690293.
5
DOIs for DICOM raw images: enabling science reproducibility.
Radiology. 2015 Apr;275(1):3-4. doi: 10.1148/radiol.2753201506.
6
The Role of FAIR Digital Objects in Biomedical Research: A Scoping Review with a Real Case of the OHDO Tool.
Stud Health Technol Inform. 2025 May 15;327:1467-1468. doi: 10.3233/SHTI250653.
9
[State of play of French data collections in the field of rare diseases].
Med Sci (Paris). 2018 May;34 Hors série n°1:22-25. doi: 10.1051/medsci/201834s111. Epub 2018 Jun 18.
10

引用本文的文献

2
Perceptual and technical barriers in sharing and formatting metadata accompanying omics studies.
Cell Genom. 2025 May 14;5(5):100845. doi: 10.1016/j.xgen.2025.100845. Epub 2025 Apr 10.
3
Computational tools and data integration to accelerate vaccine development: challenges, opportunities, and future directions.
Front Immunol. 2025 Mar 7;16:1502484. doi: 10.3389/fimmu.2025.1502484. eCollection 2025.
4
Combining Short- and Long-Read Transcriptomes for Targeted Enzyme Discovery.
Methods Mol Biol. 2025;2880:69-99. doi: 10.1007/978-1-0716-4276-4_4.
6
Data Treatment for LC-MS Untargeted Analysis.
Methods Mol Biol. 2025;2891:91-108. doi: 10.1007/978-1-0716-4334-1_5.
7
An ecosystem for producing and sharing metadata within the web of FAIR Data.
Gigascience. 2025 Jan 6;14. doi: 10.1093/gigascience/giae111.
8
FAIR Data Cube, a FAIR data infrastructure for integrated multi-omics data analysis.
J Biomed Semantics. 2024 Dec 28;15(1):20. doi: 10.1186/s13326-024-00321-2.
9
A template wizard for the cocreation of machine-readable data-reporting to harmonize the evaluation of (nano)materials.
Nat Protoc. 2024 Sep;19(9):2642-2684. doi: 10.1038/s41596-024-00993-1. Epub 2024 May 16.

本文引用的文献

1
Empowering industrial research with shared biomedical vocabularies.
Drug Discov Today. 2011 Nov;16(21-22):940-7. doi: 10.1016/j.drudis.2011.09.013. Epub 2011 Sep 23.
2
Sharing and archiving nucleic acid structure mapping data.
RNA. 2011 Jul;17(7):1204-12. doi: 10.1261/rna.2753211. Epub 2011 May 24.
3
U.S. budget. Research holds up well in final 2011 agreement.
Science. 2011 Apr 15;332(6027):291. doi: 10.1126/science.332.6027.291.
4
Closure of the NCBI SRA and implications for the long-term future of genomics data storage.
Genome Biol. 2011;12(3):402. doi: 10.1186/gb-2011-12-3-402. Epub 2011 Mar 22.
5
Advancing regulatory science.
Science. 2011 Feb 25;331(6020):987. doi: 10.1126/science.1204432.
6
The BioPAX community standard for pathway data sharing.
Nat Biotechnol. 2010 Sep;28(9):935-42. doi: 10.1038/nbt.1666. Epub 2010 Sep 9.
7
ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level.
Bioinformatics. 2010 Sep 15;26(18):2354-6. doi: 10.1093/bioinformatics/btq415. Epub 2010 Aug 2.
8
Clinical and biological data integration for biomarker discovery.
Drug Discov Today. 2010 Sep;15(17-18):741-8. doi: 10.1016/j.drudis.2010.06.005. Epub 2010 Jun 15.
10
Archiving next generation sequencing data.
Nucleic Acids Res. 2010 Jan;38(Database issue):D870-1. doi: 10.1093/nar/gkp1078. Epub 2009 Dec 3.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验