School of Natural Sciences, Linnaeus University, 39182 Kalmar, Sweden.
Amino Acids. 2012 Oct;43(4):1471-83. doi: 10.1007/s00726-012-1220-3.
Salt-bridge interactions between acidic and basic amino acids contribute to the structural stability of proteins and to protein-protein interactions. A conserved salt-bridge is a canonical feature of the α-defensin antimicrobial peptide family, but the role of this common structural element has not been fully elucidated. We have investigated mouse Paneth cell α-defensincryptdin-4 (Crp4) and peptide variants with mutations at Arg7 or Glu15 residue positions to disrupt the salt-bridge and assess the consequences on Crp4 structure, function, and stability. NMR analyses showed that both (R7G)-Crp4 and (E15G)-Crp4 adopt native-like structures, evidence of fold plasticity that allows peptides to reshuffle side chains and stabilize the structure in the absence of the salt-bridge. In contrast, introduction of a large hydrophobic side chain at position 15, as in (E15L)-Crp4 cannot be accommodated in the context of the Crp4 primary structure. Regardless of which side of the salt-bridge was mutated, salt-bridge variants retained bactericidal peptide activity with differential microbicidal effects against certain bacterial cell targets, confirming that the salt-bridge does not determine bactericidal activity per se. The increased structural flexibility induced by salt-bridge disruption enhanced peptide sensitivity to proteolysis. Although sensitivity to proteolysis by MMP7 was unaffected by most Arg(7) and Glu(150 substitutions, every salt-bridge variant was degraded extensively by trypsin. Moreover, the salt-bridge facilitates adoption of the characteristic α-defensin fold as shown by the impaired in vitro refolding of (E15D)-proCrp4, the most conservative salt-bridge disrupting replacement. In Crp4, therefore, the canonical α-defensin salt-bridge facilitates adoption of the characteristic α-defensin fold, which decreases structural flexibility and confers resistance todegradation by proteinases.
盐桥相互作用在酸性和碱性氨基酸之间有助于蛋白质的结构稳定性和蛋白质-蛋白质相互作用。保守的盐桥是α-防御素抗菌肽家族的典型特征,但这个常见结构元件的作用尚未完全阐明。我们研究了小鼠潘氏细胞α-防御素cryptdin-4(Crp4)和在Arg7 或Glu15 残基位置发生突变以破坏盐桥的肽变体,并评估其对 Crp4 结构、功能和稳定性的影响。NMR 分析表明,(R7G)-Crp4 和(E15G)-Crp4 都采用类似天然的结构,这表明折叠可塑性允许肽重新排列侧链并在没有盐桥的情况下稳定结构。相比之下,在(E15L)-Crp4 中引入位置 15 的大疏水性侧链在 Crp4 一级结构的背景下是无法容纳的。无论盐桥的哪一侧发生突变,盐桥变体都保留了杀菌肽活性,对某些细菌细胞靶标具有不同的杀菌效果,证实盐桥本身并不能决定杀菌活性。盐桥破坏引起的结构灵活性增加增强了肽对蛋白水解的敏感性。尽管盐桥突变对 MMP7 的敏感性没有受到大多数 Arg(7)和 Glu(150)取代的影响,但每种盐桥变体都被胰蛋白酶广泛降解。此外,盐桥有助于采用特征性的α-防御素折叠,如(E15D)-proCrp4 的体外折叠受损所示,这是最保守的盐桥破坏取代。因此,在 Crp4 中,典型的α-防御素盐桥有助于采用特征性的α-防御素折叠,这降低了结构灵活性并赋予了对蛋白酶降解的抗性。