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APOBEC2 是溶液中的单体:对 APOBEC3G 模型的影响。

APOBEC2 is a monomer in solution: implications for APOBEC3G models.

机构信息

Department of Structural Biology, University of Pittsburgh School of Medicine, and Pittsburgh Center for HIV Protein Interactions, Pittsburgh, Pennsylvania 15261, United States.

出版信息

Biochemistry. 2012 Mar 6;51(9):2008-17. doi: 10.1021/bi300021s. Epub 2012 Feb 27.

DOI:10.1021/bi300021s
PMID:22339232
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3316327/
Abstract

Although the physiological role of APOBEC2 is still largely unknown, a crystal structure of a truncated variant of this protein was determined several years ago [Prochnow, C. (2007) Nature445, 447-451]. This APOBEC2 structure had considerable impact in the HIV field because it was considered a good model for the structure of APOBEC3G, an important HIV restriction factor that abrogates HIV infectivity in the absence of the viral accessory protein Vif. The quaternary structure and the arrangement of the monomers of APOBEC2 in the crystal were taken as being representative for APOBEC3G and exploited in explaining its enzymatic and anti-HIV activity. Here we show, unambiguously, that in contrast to the findings for the crystal, APOBEC2 is monomeric in solution. The nuclear magnetic resonance solution structure of full-length APOBEC2 reveals that the N-terminal tail that was removed for crystallization resides close to strand β2, the dimer interface in the crystal structure, and shields this region of the protein from engaging in intermolecular contacts. In addition, the presence of the N-terminal region drastically alters the aggregation propensity of APOBEC2, rendering the full-length protein highly soluble and not prone to precipitation. In summary, our results cast doubt on all previous structure-function predictions for APOBEC3G that were based on the crystal structure of APOBEC2.

摘要

虽然 APOBEC2 的生理作用在很大程度上仍然未知,但几年前已经确定了这种蛋白质的截断变体的晶体结构[Prochnow,C.(2007)自然 445,447-451]。由于它被认为是 HIV 限制因子 APOBEC3G 结构的良好模型,APOBEC2 结构在 HIV 领域产生了相当大的影响,APOBEC3G 是一种重要的 HIV 限制因子,在没有病毒辅助蛋白 Vif 的情况下会破坏 HIV 的感染性。APOBEC2 晶体中四聚体结构和单体的排列被认为代表了 APOBEC3G,并被用于解释其酶和抗 HIV 活性。在这里,我们明确地表明,与晶体的发现相反,APOBEC2 在溶液中是单体形式。全长 APOBEC2 的核磁共振溶液结构表明,晶体中去除的 N 端尾巴靠近β2 链,这是晶体结构中的二聚体界面,并将该区域的蛋白质从分子间接触中屏蔽。此外,N 端区域的存在极大地改变了 APOBEC2 的聚集倾向,使全长蛋白质高度可溶性,不易沉淀。总之,我们的结果对所有以前基于 APOBEC2 晶体结构的关于 APOBEC3G 的结构-功能预测提出了质疑。

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