• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

基因组范围的菌株设计和构建工具。

Tools for genome-wide strain design and construction.

机构信息

Department of Chemical and Biological Engineering, University of Colorado, Campus Box 424, Boulder, CO 80309, USA.

出版信息

Curr Opin Biotechnol. 2012 Oct;23(5):666-71. doi: 10.1016/j.copbio.2012.01.012. Epub 2012 Feb 20.

DOI:10.1016/j.copbio.2012.01.012
PMID:22357141
Abstract

Advances in DNA sequencing and synthesis technologies concurrent with the development of new recombinant DNA approaches have enabled the extension of directed evolution algorithms to the genome-scale. It is now possible to simultaneously map the effect of mutation(s) in each and every gene in the genome onto almost any screenable or selectable phenotype in less than a week. Such maps can be used to direct the design and construction of libraries containing billions of rationally designed combinatorial mutations. Such combinatorial libraries can now also be created and evaluated in less than a week. The review presents and discusses these new technologies within the context of directed evolution and inverse metabolic engineering.

摘要

DNA 测序和合成技术的进步与新的重组 DNA 方法的发展并行,使定向进化算法得以扩展到基因组规模。现在,在不到一周的时间内,就可以同时映射基因组中每个基因的突变对几乎任何可筛选或可选择表型的影响。这些图谱可用于指导设计和构建包含数十亿个合理设计的组合突变的文库。现在,这些组合文库也可以在不到一周的时间内创建和评估。本文在定向进化和反向代谢工程的背景下介绍和讨论了这些新技术。

相似文献

1
Tools for genome-wide strain design and construction.基因组范围的菌株设计和构建工具。
Curr Opin Biotechnol. 2012 Oct;23(5):666-71. doi: 10.1016/j.copbio.2012.01.012. Epub 2012 Feb 20.
2
Genome engineering and gene expression control for bacterial strain development.用于细菌菌株开发的基因组工程与基因表达控制
Biotechnol J. 2015 Jan;10(1):56-68. doi: 10.1002/biot.201400057. Epub 2014 Aug 26.
3
Reduction-to-synthesis: the dominant approach to genome-scale synthetic biology.还原合成法:基因组规模合成生物学的主导方法。
Trends Biotechnol. 2024 Aug;42(8):1048-1063. doi: 10.1016/j.tibtech.2024.02.008. Epub 2024 Feb 28.
4
Genomics enabled approaches in strain engineering.基因组学助力菌株工程的方法。
Curr Opin Microbiol. 2009 Jun;12(3):223-30. doi: 10.1016/j.mib.2009.04.005. Epub 2009 May 19.
5
Engineering complex biological systems in bacteria through recombinase-assisted genome engineering.通过重组酶辅助的基因组工程在细菌中工程化复杂的生物系统。
Nat Protoc. 2014;9(6):1320-36. doi: 10.1038/nprot.2014.084. Epub 2014 May 15.
6
Toward Genome-Based Metabolic Engineering in Bacteria.朝着基于基因组的细菌代谢工程发展。
Adv Appl Microbiol. 2017;101:49-82. doi: 10.1016/bs.aambs.2017.07.001. Epub 2017 Aug 31.
7
In the fast lane: large-scale bacterial genome engineering.在快车道上:大规模细菌基因组工程。
J Biotechnol. 2012 Jul 31;160(1-2):72-9. doi: 10.1016/j.jbiotec.2012.02.012. Epub 2012 Mar 1.
8
Strategies used for genetically modifying bacterial genome: site-directed mutagenesis, gene inactivation, and gene over-expression.用于基因改造细菌基因组的策略:定点诱变、基因失活和基因过表达。
J Zhejiang Univ Sci B. 2016 Feb;17(2):83-99. doi: 10.1631/jzus.B1500187.
9
Metabolic engineering by genome shuffling.通过基因组改组进行代谢工程
Nat Biotechnol. 2002 Jul;20(7):666-8. doi: 10.1038/nbt0702-666.
10
Multiplexed tracking of combinatorial genomic mutations in engineered cell populations.工程化细胞群体中组合基因组突变的多重跟踪。
Nat Biotechnol. 2015 Jun;33(6):631-7. doi: 10.1038/nbt.3177. Epub 2015 Mar 23.

引用本文的文献

1
Economical analysis of saturation mutagenesis experiments.饱和诱变实验的经济分析
Sci Rep. 2015 Jul 20;5:10654. doi: 10.1038/srep10654.
2
Directed evolution combined with synthetic biology strategies expedite semi-rational engineering of genes and genomes.定向进化与合成生物学策略相结合,加速了基因和基因组的半理性工程改造。
Bioengineered. 2015;6(3):136-40. doi: 10.1080/21655979.2015.1011029. Epub 2015 Jan 26.
3
CONSTRICTOR: constraint modification provides insight into design of biochemical networks.收缩器:约束修改为生化网络的设计提供了见解。
PLoS One. 2014 Nov 25;9(11):e113820. doi: 10.1371/journal.pone.0113820. eCollection 2014.
4
Analyzing the genomic variation of microbial cell factories in the era of "New Biotechnology".分析“新型生物技术”时代微生物细胞工厂的基因组变异。
Comput Struct Biotechnol J. 2012 Nov 15;3:e201210012. doi: 10.5936/csbj.201210012. eCollection 2012.
5
Genome-wide mapping of furfural tolerance genes in Escherichia coli.大肠杆菌中外源糠醛耐受基因的全基因组图谱绘制。
PLoS One. 2014 Jan 28;9(1):e87540. doi: 10.1371/journal.pone.0087540. eCollection 2014.
6
Strategies for the multiplex mapping of genes to traits.基因与性状关联的多重映射策略。
Microb Cell Fact. 2013 Oct 30;12:99. doi: 10.1186/1475-2859-12-99.
7
Synthetic tolerance: three noncoding small RNAs, DsrA, ArcZ and RprA, acting supra-additively against acid stress.合成耐受:三种非编码小 RNA,DsrA、ArcZ 和 RprA,对酸胁迫表现出超加性作用。
Nucleic Acids Res. 2013 Oct;41(18):8726-37. doi: 10.1093/nar/gkt651. Epub 2013 Jul 27.
8
PanDaTox: a tool for accelerated metabolic engineering.PanDaTox:一种用于加速代谢工程的工具。
Bioengineered. 2012 Jul-Aug;3(4):218-21. doi: 10.4161/bioe.20431. Epub 2012 Jun 18.