Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon 34141, Republic of Korea; KI for the BioCentury, Korea Advanced Institute of Science and Technology, Daejeon 34141, Republic of Korea.
Department of Bioengineering, University of California San Diego, La Jolla, CA 92093, USA.
Trends Biotechnol. 2024 Aug;42(8):1048-1063. doi: 10.1016/j.tibtech.2024.02.008. Epub 2024 Feb 28.
Advances in systems and synthetic biology have propelled the construction of reduced bacterial genomes. Genome reduction was initially focused on exploring properties of minimal genomes, but more recently it has been deployed as an engineering strategy to enhance strain performance. This review provides the latest updates on reduced genomes, focusing on dual-track approaches of top-down reduction and bottom-up synthesis for their construction. Using cases from studies that are based on established industrial workhorse strains, we discuss the construction of a series of synthetic phenotypes that are candidates for biotechnological applications. Finally, we address the possible uses of reduced genomes for biotechnological applications and the needed future research directions that may ultimately lead to the total synthesis of rationally designed genomes.
系统和合成生物学的进步推动了简化细菌基因组的构建。基因组简化最初侧重于探索最小基因组的特性,但最近已被用作增强菌株性能的工程策略。本综述提供了简化基因组的最新更新,重点介绍了自上而下的简化和自下而上的合成的双轨方法来构建简化基因组。通过基于已建立的工业主力菌株的研究案例,我们讨论了一系列具有生物技术应用潜力的合成表型的构建。最后,我们讨论了简化基因组在生物技术应用中的可能用途以及可能最终导致合理设计基因组的全合成的未来研究方向。