SynthSys Edinburgh, University of Edinburgh, Edinburgh, UK.
Bioinformatics. 2012 Apr 15;28(8):1180-1. doi: 10.1093/bioinformatics/bts101. Epub 2012 Feb 25.
The simulation experiment description markup language (SED-ML) is a new community data standard to encode computational biology experiments in a computer-readable XML format. Its widespread adoption will require the development of software support to work with SED-ML files. Here, we describe a software tool, SED-ED, to view, edit, validate and annotate SED-ML documents while shielding end-users from the underlying XML representation. SED-ED supports modellers who wish to create, understand and further develop a simulation description provided in SED-ML format.
SED-ED is available as a standalone Java application, as an Eclipse plug-in and as an SBSI (www.sbsi.ed.ac.uk) plug-in, all under an MIT open-source license. Source code is at https://sed-ed-sedmleditor.googlecode.com/svn. The application itself is available from https://sourceforge.net/projects/jlibsedml/files/SED-ED/.
模拟实验描述标记语言（SED-ML）是一种新的社区数据标准，用于以计算机可读的 XML 格式对计算生物学实验进行编码。要广泛采用它，就需要开发软件支持来处理 SED-ML 文件。在这里，我们描述了一个软件工具 SED-ED，用于查看、编辑、验证和注释 SED-ML 文档，同时使用户不必了解底层的 XML 表示。SED-ED 支持建模人员创建、理解和进一步开发以 SED-ML 格式提供的模拟描述。
SED-ED 可用作独立的 Java 应用程序、Eclipse 插件和 SBSI（www.sbsi.ed.ac.uk）插件，均根据 MIT 开源许可证获得许可。源代码位于 https://sed-ed-sedmleditor.googlecode.com/svn。该应用程序本身可从 https://sourceforge.net/projects/jlibsedml/files/SED-ED/ 获得。
