Choi Kiri, Smith Lucian P, Medley J Kyle, Sauro Herbert M
1 University of Washington, Department of Bioengineering, Seattle, WA, USA.
J Bioinform Comput Biol. 2016 Dec;14(6):1650035. doi: 10.1142/S0219720016500359. Epub 2016 Sep 30.
Model simulation exchange has been standardized with the Simulation Experiment Description Markup Language (SED-ML), but specialized software is needed to generate simulations in this format. Text-based languages allow researchers to create and modify experimental protocols quickly and easily, and export them to a common machine-readable format.
phraSED-ML language allows modelers to use simple text commands to encode various elements of SED-ML (models, tasks, simulations, and results) in a format easy to read and modify. The library can translate this script to SED-ML for use in other softwares.
phraSED-ML language specification, libphrasedml library, and source code are available under BSD license from http://phrasedml.sourceforge.net/ .
模型模拟交换已通过模拟实验描述标记语言（SED-ML）实现标准化，但需要专门的软件来生成这种格式的模拟。基于文本的语言使研究人员能够快速轻松地创建和修改实验方案，并将其导出为通用的机器可读格式。
phraSED-ML语言允许建模人员使用简单的文本命令以易于阅读和修改的格式对SED-ML的各种元素（模型、任务、模拟和结果）进行编码。该库可以将此脚本转换为SED-ML以供其他软件使用。
phraSED-ML语言规范、libphrasedml库和源代码可在BSD许可下从http://phrasedml.sourceforge.net/获取。
