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无性繁殖群体中固定有益突变的分布与适应率。

Distribution of fixed beneficial mutations and the rate of adaptation in asexual populations.

机构信息

Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA.

出版信息

Proc Natl Acad Sci U S A. 2012 Mar 27;109(13):4950-5. doi: 10.1073/pnas.1119910109. Epub 2012 Feb 27.

Abstract

When large asexual populations adapt, competition between simultaneously segregating mutations slows the rate of adaptation and restricts the set of mutations that eventually fix. This phenomenon of interference arises from competition between mutations of different strengths as well as competition between mutations that arise on different fitness backgrounds. Previous work has explored each of these effects in isolation, but the way they combine to influence the dynamics of adaptation remains largely unknown. Here, we describe a theoretical model to treat both aspects of interference in large populations. We calculate the rate of adaptation and the distribution of fixed mutational effects accumulated by the population. We focus particular attention on the case when the effects of beneficial mutations are exponentially distributed, as well as on a more general class of exponential-like distributions. In both cases, we show that the rate of adaptation and the influence of genetic background on the fixation of new mutants is equivalent to an effective model with a single selection coefficient and rescaled mutation rate, and we explicitly calculate these effective parameters. We find that the effective selection coefficient exactly coincides with the most common fixed mutational effect. This equivalence leads to an intuitive picture of the relative importance of different types of interference effects, which can shift dramatically as a function of the population size, mutation rate, and the underlying distribution of fitness effects.

摘要

当大型无性繁殖群体适应环境时,同时分离的突变之间的竞争会减缓适应的速度,并限制最终固定的突变集。这种干扰现象源于不同强度的突变之间的竞争,以及在不同适应度背景下产生的突变之间的竞争。以前的工作已经分别探讨了这两种效应,但它们如何结合起来影响适应的动态仍然知之甚少。在这里,我们描述了一个理论模型,可以同时处理大群体中干扰的这两个方面。我们计算了种群的适应速度和积累的固定突变效应的分布。我们特别关注有益突变效应呈指数分布的情况,以及更一般的指数分布类。在这两种情况下,我们表明,适应速度和遗传背景对新突变体固定的影响相当于具有单个选择系数和缩放突变率的有效模型,并且我们明确地计算了这些有效参数。我们发现,适应速度与最常见的固定突变效应完全一致。这种等价关系导致了不同类型的干扰效应相对重要性的直观图景,这种重要性可以随着种群大小、突变率和适应度效应的基本分布函数的变化而剧烈变化。

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本文引用的文献

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