• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

遗传变异与无性繁殖群体中有益突变的命运。

Genetic variation and the fate of beneficial mutations in asexual populations.

机构信息

Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08544, USA.

出版信息

Genetics. 2011 Jul;188(3):647-61. doi: 10.1534/genetics.111.128942. Epub 2011 May 5.

DOI:10.1534/genetics.111.128942
PMID:21546542
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3176544/
Abstract

The fate of a newly arising beneficial mutation depends on many factors, such as the population size and the availability and fitness effects of other mutations that accumulate in the population. It has proved difficult to understand how these factors influence the trajectories of particular mutations, since experiments have primarily focused on characterizing successful clones emerging from a small number of evolving populations. Here, we present the results of a massively parallel experiment designed to measure the full spectrum of possible fates of new beneficial mutations in hundreds of experimental yeast populations, whether these mutations are ultimately successful or not. Using strains in which a particular class of beneficial mutation is detectable by fluorescence, we followed the trajectories of these beneficial mutations across 592 independent populations for 1000 generations. We find that the fitness advantage provided by individual mutations plays a surprisingly small role. Rather, underlying "background" genetic variation is quickly generated in our initially clonal populations and plays a crucial role in determining the fate of each individual beneficial mutation in the evolving population.

摘要

新出现的有利突变的命运取决于许多因素,例如种群大小以及在种群中积累的其他有利突变的可用性和适合度效应。由于实验主要集中在描述从小规模进化种群中出现的成功克隆,因此很难理解这些因素如何影响特定突变的轨迹。在这里,我们介绍了一项大规模平行实验的结果,该实验旨在测量数百个实验酵母种群中有利新突变的所有可能命运,无论这些突变最终是否成功。使用可以通过荧光检测特定类有益突变的菌株,我们在 592 个独立种群中追踪这些有益突变的轨迹,历时 1000 代。我们发现,单个突变提供的适应性优势作用很小。相反,在我们最初的克隆种群中迅速产生了潜在的“背景”遗传变异,并在决定进化种群中每个有益突变的命运方面起着关键作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6905/3176544/78a0ae957674/647fig11.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6905/3176544/0435b0f630ff/647fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6905/3176544/2069801d807f/647fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6905/3176544/3c3765697cbc/647fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6905/3176544/926491da3629/647fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6905/3176544/a1ed3e588fd7/647fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6905/3176544/5ad2209ebf7b/647fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6905/3176544/1114ec006bc0/647fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6905/3176544/b659393cd031/647fig8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6905/3176544/34583ceb68c6/647fig9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6905/3176544/4d935664cb2f/647fig10.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6905/3176544/78a0ae957674/647fig11.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6905/3176544/0435b0f630ff/647fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6905/3176544/2069801d807f/647fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6905/3176544/3c3765697cbc/647fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6905/3176544/926491da3629/647fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6905/3176544/a1ed3e588fd7/647fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6905/3176544/5ad2209ebf7b/647fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6905/3176544/1114ec006bc0/647fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6905/3176544/b659393cd031/647fig8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6905/3176544/34583ceb68c6/647fig9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6905/3176544/4d935664cb2f/647fig10.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6905/3176544/78a0ae957674/647fig11.jpg

相似文献

1
Genetic variation and the fate of beneficial mutations in asexual populations.遗传变异与无性繁殖群体中有益突变的命运。
Genetics. 2011 Jul;188(3):647-61. doi: 10.1534/genetics.111.128942. Epub 2011 May 5.
2
Recombination Alters the Dynamics of Adaptation on Standing Variation in Laboratory Yeast Populations.重组改变了实验室酵母群体中站立变异适应性的动态。
Mol Biol Evol. 2018 Jan 1;35(1):180-201. doi: 10.1093/molbev/msx278.
3
The fates of mutant lineages and the distribution of fitness effects of beneficial mutations in laboratory budding yeast populations.实验室出芽酵母群体中突变谱系的命运及有益突变的适合度效应分布。
Genetics. 2014 Apr;196(4):1217-26. doi: 10.1534/genetics.113.160069. Epub 2014 Feb 10.
4
Sex enhances adaptation by unlinking beneficial from detrimental mutations in experimental yeast populations.性可通过在实验酵母群体中使有益突变与有害突变脱钩来促进适应。
BMC Evol Biol. 2012 Mar 30;12:43. doi: 10.1186/1471-2148-12-43.
5
Sex speeds adaptation by altering the dynamics of molecular evolution.性别通过改变分子进化的动态过程来加速适应性。
Nature. 2016 Mar 10;531(7593):233-6. doi: 10.1038/nature17143. Epub 2016 Feb 24.
6
Beneficial mutation selection balance and the effect of linkage on positive selection.有益突变选择平衡及连锁对正选择的影响。
Genetics. 2007 Jul;176(3):1759-98. doi: 10.1534/genetics.106.067678. Epub 2007 May 4.
7
Relative fitness can decrease in evolving asexual populations of S. cerevisiae.在酿酒酵母的无性进化群体中,相对适合度可能会降低。
Nature. 1983;306(5941):368-70. doi: 10.1038/306368a0.
8
Estimation of the rate and effect of new beneficial mutations in asexual populations.无性繁殖群体中新有益突变的速率和效应估计
Theor Popul Biol. 2012 Mar;81(2):168-78. doi: 10.1016/j.tpb.2011.11.005. Epub 2011 Dec 3.
9
The adaptation rate of asexuals: deleterious mutations, clonal interference and population bottlenecks.无性生殖的适应速度:有害突变、克隆干扰和种群瓶颈。
Evolution. 2010 Jul;64(7):1973-83. doi: 10.1111/j.1558-5646.2010.00981.x. Epub 2010 Feb 26.
10
Interference Effects of Deleterious and Beneficial Mutations in Large Asexual Populations.有害和有益突变在大型无性群体中的干扰效应。
Genetics. 2019 Apr;211(4):1357-1369. doi: 10.1534/genetics.119.301960. Epub 2019 Jan 30.

引用本文的文献

1
Genetic Predisposition Toward Multicellularity in Chlamydomonas reinhardtii.莱茵衣藻向多细胞性的遗传易感性。
Genome Biol Evol. 2025 May 30;17(6). doi: 10.1093/gbe/evaf090.
2
Template switching during DNA replication is a prevalent source of adaptive gene amplification.DNA复制过程中的模板转换是适应性基因扩增的常见来源。
Elife. 2025 Feb 3;13:RP98934. doi: 10.7554/eLife.98934.
3
Hybrid adaptation is hampered by Haldane's sieve.杂种适应受到哈代-温伯格定律的阻碍。

本文引用的文献

1
Mutational effects and population dynamics during viral adaptation challenge current models.病毒适应过程中的突变效应和种群动态对当前模型提出了挑战。
Genetics. 2011 Jan;187(1):185-202. doi: 10.1534/genetics.110.121400. Epub 2010 Nov 1.
2
Genome evolution and adaptation in a long-term experiment with Escherichia coli.大肠杆菌长期实验中的基因组进化与适应
Nature. 2009 Oct 29;461(7268):1243-7. doi: 10.1038/nature08480. Epub 2009 Oct 18.
3
Genome-wide mutational diversity in an evolving population of Escherichia coli.大肠杆菌进化群体中的全基因组突变多样性
Nat Commun. 2024 Nov 28;15(1):10319. doi: 10.1038/s41467-024-54105-4.
4
Template switching during DNA replication is a prevalent source of adaptive gene amplification.DNA复制过程中的模板转换是适应性基因扩增的普遍来源。
bioRxiv. 2024 Oct 15:2024.05.03.589936. doi: 10.1101/2024.05.03.589936.
5
Empirical evidence of resource dependent evolution of payoff matrices in Saccharomyces cerevisiae populations.酿酒酵母种群中收益矩阵资源依赖型进化的实证证据。
J Evol Biol. 2025 Jan 3;38(1):122-128. doi: 10.1093/jeb/voae128.
6
Quantitative systems-based prediction of antimicrobial resistance evolution.基于定量系统的抗菌药物耐药性进化预测。
NPJ Syst Biol Appl. 2023 Sep 7;9(1):40. doi: 10.1038/s41540-023-00304-6.
7
Evolution of a minimal cell.最小细胞的进化。
Nature. 2023 Aug;620(7972):122-127. doi: 10.1038/s41586-023-06288-x. Epub 2023 Jul 5.
8
Self-contained Beta-with-Spikes approximation for inference under a Wright-Fisher model.自包含带有尖峰的贝塔分布逼近在 Wright-Fisher 模型下的推断。
Genetics. 2023 Oct 4;225(2). doi: 10.1093/genetics/iyad092.
9
An improved algorithm for inferring mutational parameters from bar-seq evolution experiments.一种从 bar-seq 进化实验中推断突变参数的改进算法。
BMC Genomics. 2023 May 6;24(1):246. doi: 10.1186/s12864-023-09345-x.
10
On-person adaptive evolution of Staphylococcus aureus during treatment for atopic dermatitis.金黄色葡萄球菌在特应性皮炎治疗过程中的个体适应性进化。
Cell Host Microbe. 2023 Apr 12;31(4):593-603.e7. doi: 10.1016/j.chom.2023.03.009.
Cold Spring Harb Symp Quant Biol. 2009;74:119-29. doi: 10.1101/sqb.2009.74.018. Epub 2009 Sep 23.
4
The cost of gene expression underlies a fitness trade-off in yeast.基因表达的成本构成了酵母中一种适应性权衡的基础。
Proc Natl Acad Sci U S A. 2009 Apr 7;106(14):5755-60. doi: 10.1073/pnas.0901620106. Epub 2009 Mar 19.
5
The Beagle in a bottle.瓶中的小猎犬。
Nature. 2009 Feb 12;457(7231):824-9. doi: 10.1038/nature07892.
6
Genomewide patterns of substitution in adaptively evolving populations of the RNA bacteriophage MS2.RNA噬菌体MS2适应性进化群体中的全基因组替代模式。
Genetics. 2009 Apr;181(4):1535-44. doi: 10.1534/genetics.107.085837. Epub 2009 Feb 2.
7
The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast.酵母对可控营养限制环境的进化适应的种类和动态变化。
PLoS Genet. 2008 Dec;4(12):e1000303. doi: 10.1371/journal.pgen.1000303. Epub 2008 Dec 12.
8
Molecular characterization of clonal interference during adaptive evolution in asexual populations of Saccharomyces cerevisiae.酿酒酵母无性群体适应性进化过程中克隆干扰的分子特征分析
Nat Genet. 2008 Dec;40(12):1499-504. doi: 10.1038/ng.280.
9
Clonal interference, multiple mutations and adaptation in large asexual populations.大型无性繁殖群体中的克隆干扰、多重突变与适应性
Genetics. 2008 Dec;180(4):2163-73. doi: 10.1534/genetics.108.090019. Epub 2008 Oct 1.
10
Estimating the per-base-pair mutation rate in the yeast Saccharomyces cerevisiae.估算酿酒酵母中每碱基对的突变率。
Genetics. 2008 Jan;178(1):67-82. doi: 10.1534/genetics.107.071506.