Department of Biochemistry, Purdue University, West Lafayette, Indiana 47907, USA.
Protein Sci. 2012 May;21(5):686-96. doi: 10.1002/pro.2054. Epub 2012 Mar 29.
Bacterial formyl-CoA:oxalate CoA-transferase (FCOCT) and oxalyl-CoA decarboxylase work in tandem to perform a proton-consuming decarboxylation that has been suggested to have a role in generalized acid resistance. FCOCT is the product of uctB in the acidophilic acetic acid bacterium Acetobacter aceti. As expected for an acid-resistance factor, UctB remains folded at the low pH values encountered in the A. aceti cytoplasm. A comparison of crystal structures of FCOCTs and related proteins revealed few features in UctB that would distinguish it from nonacidophilic proteins and thereby account for its acid stability properties, other than a strikingly featureless electrostatic surface. The apparently neutral surface is a result of a "speckled" charge decoration, in which charged surface residues are surrounded by compensating charges but do not form salt bridges. A quantitative comparison among orthologs identified a pattern of residue substitution in UctB that may be a consequence of selection for protein stability by constant exposure to acetic acid. We suggest that this surface charge pattern, which is a distinctive feature of A. aceti proteins, creates a stabilizing electrostatic network without stiffening the protein or compromising protein-solvent interactions.
细菌甲酰基辅酶 A:草酰基辅酶 A 转移酶(FCOCT)和草酰基辅酶 A 脱羧酶协同作用进行质子消耗脱羧反应,该反应被认为在广义耐酸性中起作用。FCOCT 是嗜酸醋酸菌醋酸杆菌中 uctB 的产物。与耐酸性因子一致,UctB 在醋酸杆菌细胞质中遇到的低 pH 值下仍保持折叠。FCOCT 和相关蛋白的晶体结构比较揭示了 UctB 中很少有特征使其与非嗜酸蛋白区分开来,从而解释其酸稳定性特性,而不是明显无特征的静电表面。显然中性的表面是“斑驳”电荷修饰的结果,其中带电荷的表面残基被补偿电荷包围,但不形成盐桥。在直系同源物之间的定量比较中,确定了 UctB 中取代残基的模式,这可能是由于不断暴露于乙酸中选择蛋白质稳定性的结果。我们认为,这种表面电荷模式是醋酸杆菌蛋白的一个显著特征,它形成了一个稳定的静电网络,而不会使蛋白质变硬或损害蛋白质-溶剂相互作用。