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促进草酸脱羧酶中质子偶联电子转移的结构元素。

A structural element that facilitates proton-coupled electron transfer in oxalate decarboxylase.

机构信息

Department of Chemistry, University of Florida, Gainesville, Florida 32611, United States.

出版信息

Biochemistry. 2012 Apr 3;51(13):2911-20. doi: 10.1021/bi300001q. Epub 2012 Mar 19.

Abstract

The conformational properties of an active-site loop segment, defined by residues Ser(161)-Glu(162)-Asn(163)-Ser(164), have been shown to be important for modulating the intrinsic reactivity of Mn(II) in the active site of Bacillus subtilis oxalate decarboxylase. We now detail the functional and structural consequences of removing a conserved Arg/Thr hydrogen-bonding interaction by site-specific mutagenesis. Hence, substitution of Thr-165 by a valine residue gives an OxDC variant (T165V) that exhibits impaired catalytic activity. Heavy-atom isotope effect measurements, in combination with the X-ray crystal structure of the T165V OxDC variant, demonstrate that the conserved Arg/Thr hydrogen bond is important for correctly locating the side chain of Glu-162, which mediates a proton-coupled electron transfer (PCET) step prior to decarboxylation in the catalytically competent form of OxDC. In addition, we show that the T165V OxDC variant exhibits a lower level of oxalate consumption per dioxygen molecule, consistent with the predictions of recent spin-trapping experiments [Imaram et al. (2011) Free Radicals Biol. Med. 50, 1009-1015]. This finding implies that dioxygen might participate as a reversible electron sink in two putative PCET steps and is not merely used to generate a protein-based radical or oxidized metal center.

摘要

活性位点环段的构象特性,由残基 Ser(161)-Glu(162)-Asn(163)-Ser(164)定义,已被证明对于调节枯草芽孢杆菌草酸盐脱羧酶活性位点中 Mn(II)的固有反应性非常重要。我们现在详细介绍通过定点突变去除保守的 Arg/Thr 氢键相互作用的功能和结构后果。因此,通过替换 Thr-165 为缬氨酸残基,得到 OxDC 变体(T165V),其表现出受损的催化活性。重原子同位素效应测量,结合 T165V OxDC 变体的 X 射线晶体结构,表明保守的 Arg/Thr 氢键对于正确定位 Glu-162 的侧链很重要,Glu-162 在 OxDC 的催化活性形式中,介导质子偶联电子转移 (PCET) 步骤,然后进行脱羧。此外,我们表明 T165V OxDC 变体每消耗一个氧分子的草酸盐量较低,与最近的自旋捕获实验的预测一致 [Imaram 等人。(2011 年)自由基生物学与医学 50,1009-1015]。这一发现意味着氧气可能作为两个假定的 PCET 步骤中的可逆电子汇参与,而不仅仅是用于生成基于蛋白质的自由基或氧化金属中心。

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