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使用双关联分析对光激活定位显微镜 (PALM) 数据集进行定量分析。

Quantitative analysis of photoactivated localization microscopy (PALM) datasets using pair-correlation analysis.

机构信息

The Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MA, USA.

出版信息

Bioessays. 2012 May;34(5):396-405. doi: 10.1002/bies.201200022. Epub 2012 Mar 23.

DOI:10.1002/bies.201200022
PMID:22447653
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3659788/
Abstract

Pointillistic based super-resolution techniques, such as photoactivated localization microscopy (PALM), involve multiple cycles of sequential activation, imaging, and precise localization of single fluorescent molecules. A super-resolution image, having nanoscopic structural information, is then constructed by compiling all the image sequences. Because the final image resolution is determined by the localization precision of detected single molecules and their density, accurate image reconstruction requires imaging of biological structures labeled with fluorescent molecules at high density. In such image datasets, stochastic variations in photon emission and intervening dark states lead to uncertainties in identification of single molecules. This, in turn, prevents the proper utilization of the wealth of information on molecular distribution and quantity. A recent strategy for overcoming this problem is pair-correlation analysis applied to PALM. Using rigorous statistical algorithms to estimate the number of detected proteins, this approach allows the spatial organization of molecules to be quantitatively described.

摘要

基于点扩散的超分辨率技术,如光激活定位显微镜(PALM),涉及多个连续激活、成像和单个荧光分子精确定位的循环。通过编译所有图像序列,构建具有纳米级结构信息的超分辨率图像。由于最终图像分辨率取决于检测到的单个分子的定位精度及其密度,因此需要以高荧光分子密度对生物结构进行成像,以实现准确的图像重建。在这样的图像数据集中,光子发射的随机变化和中间暗态会导致单个分子的识别出现不确定性。这反过来又妨碍了对分子分布和数量的丰富信息的充分利用。最近的一种克服此问题的策略是将对关联分析应用于 PALM。通过使用严格的统计算法来估计检测到的蛋白质数量,该方法可以定量描述分子的空间组织。

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本文引用的文献

1
Correlation functions quantify super-resolution images and estimate apparent clustering due to over-counting.相关函数量化超分辨率图像,并估计由于重复计数导致的明显聚类。
PLoS One. 2012;7(2):e31457. doi: 10.1371/journal.pone.0031457. Epub 2012 Feb 27.
2
Bleaching/blinking assisted localization microscopy for superresolution imaging using standard fluorescent molecules.利用标准荧光分子进行超分辨率成像的漂白/闪烁辅助定位显微镜。
Proc Natl Acad Sci U S A. 2011 Dec 27;108(52):21081-6. doi: 10.1073/pnas.1117430109. Epub 2011 Dec 13.
3
Functional nanoscale organization of signaling molecules downstream of the T cell antigen receptor.T 细胞抗原受体下游信号分子的功能纳米级组织。
Immunity. 2011 Nov 23;35(5):705-20. doi: 10.1016/j.immuni.2011.10.004. Epub 2011 Nov 4.
4
Probing protein heterogeneity in the plasma membrane using PALM and pair correlation analysis.使用 PALM 和对关联分析探测质膜中的蛋白质异质性。
Nat Methods. 2011 Sep 18;8(11):969-75. doi: 10.1038/nmeth.1704.
5
Spatial association of signaling proteins and F-actin effects on cluster assembly analyzed via photoactivation localization microscopy in T cells.通过光活化定位显微镜在 T 细胞中分析信号蛋白的空间关联和 F-肌动蛋白对簇组装的影响。
PLoS One. 2011;6(8):e23586. doi: 10.1371/journal.pone.0023586. Epub 2011 Aug 24.
6
Quantitative photo activated localization microscopy: unraveling the effects of photoblinking.定量光激活定位显微镜:揭示光致闪烁的影响。
PLoS One. 2011;6(7):e22678. doi: 10.1371/journal.pone.0022678. Epub 2011 Jul 26.
7
A photoswitchable orange-to-far-red fluorescent protein, PSmOrange.一个光致变色的橙红色到远红色荧光蛋白,PSmOrange。
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8
Identification of clustering artifacts in photoactivated localization microscopy.光激活定位显微镜中聚类伪影的识别
Nat Methods. 2011 Jun 12;8(7):527-8. doi: 10.1038/nmeth.1627.
9
Emerging in vivo analyses of cell function using fluorescence imaging (*).利用荧光成像进行细胞功能的体内分析(*)。
Annu Rev Biochem. 2011;80:327-32. doi: 10.1146/annurev-biochem-121010-125553.
10
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