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从化学自养细菌内共生体克隆的深海核酮糖-1,5-二磷酸羧化酶基因的核苷酸序列及表达

Nucleotide sequence and expression of a deep-sea ribulose-1,5-bisphosphate carboxylase gene cloned from a chemoautotrophic bacterial endosymbiont.

作者信息

Stein J L, Haygood M, Felbeck H

机构信息

Marine Biology Research Division, Scripps Institution of Oceanography, University of California, San Diego, La Jolla 92093.

出版信息

Proc Natl Acad Sci U S A. 1990 Nov;87(22):8850-4. doi: 10.1073/pnas.87.22.8850.

DOI:10.1073/pnas.87.22.8850
PMID:2247456
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC55057/
Abstract

The gene coding for ribulose-1,5-bisphosphate carboxylase [RuBisCO; 3-phospho-D-glycerate carboxy-lyase (dimerizing), EC 4.1.1.39] was cloned from a sulfur-oxidizing chemoautotrophic bacterium that resides as an endosymbiont within the gill tissues of Alvinoconcha hessleri, a gastropod inhabiting deep-sea hydrothermal vents. Nucleotide sequence analysis of the cloned fragment demonstrated that the genes encoding the large (RbcL) and small (RbcS) subunits of the symbiont RuBisCO were organized similarly to the RuBisCO operons of free-living photo- and chemoautotrophic prokaryotes. The symbiont rbcL gene shared the highest degree of nucleotide sequence identity with the cyanobacterium Anabaena (69%) while the rbcS nucleotide sequence shared 61% identity with that of the green alga Chlamydomonas reinhardtii. Comparison with a 153-nucleotide partial rbcL sequence from a symbiont of the bivalve Solemya reidi indicated that the two symbiont sequences shared 85% sequence identity at the nucleotide level and 93% at the amino acid level, suggesting a relatively recent common origin. Escherichia coli transformed with a plasmid carrying the RuBisCO operon of the gastropod symbiont in the proper orientation for transcription from the plasmid lac promoter expressed catalytically active RuBisCO. The presence of enzyme activity suggests the proper assembly of the subunits of this deep-sea RuBisCO into the holoenzyme.

摘要

编码核酮糖-1,5-二磷酸羧化酶[RuBisCO;3-磷酸-D-甘油酸羧基裂解酶(二聚化),EC 4.1.1.39]的基因,是从一种硫氧化化能自养细菌中克隆得到的,这种细菌作为内共生体存在于赫氏深海蛤(Alvinoconcha hessleri)的鳃组织中,赫氏深海蛤是一种栖息于深海热液喷口的腹足纲动物。对克隆片段的核苷酸序列分析表明,编码共生体RuBisCO大亚基(RbcL)和小亚基(RbcS)的基因,其组织方式与自由生活的光合和化能自养原核生物的RuBisCO操纵子相似。共生体rbcL基因与蓝藻鱼腥藻(Anabaena)的核苷酸序列同一性最高(69%),而rbcS核苷酸序列与莱茵衣藻(Chlamydomonas reinhardtii)的同一性为61%。与双壳类里氏潜泥蛤(Solemya reidi)共生体的153个核苷酸的rbcL部分序列进行比较表明,这两个共生体序列在核苷酸水平上的序列同一性为85%,在氨基酸水平上为93%,这表明它们有相对较近的共同起源。用携带腹足纲动物共生体RuBisCO操纵子的质粒进行转化,该质粒以正确的方向从质粒lac启动子转录,从而使大肠杆菌表达出具有催化活性的RuBisCO。酶活性的存在表明这种深海RuBisCO的亚基正确组装成了全酶。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/610e/55057/15b1c615df8a/pnas01047-0176-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/610e/55057/15b1c615df8a/pnas01047-0176-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/610e/55057/15b1c615df8a/pnas01047-0176-a.jpg

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1
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Proc Natl Acad Sci U S A. 1983 Apr;80(7):1835-9. doi: 10.1073/pnas.80.7.1835.
2
A comprehensive set of sequence analysis programs for the VAX.一套适用于VAX的综合序列分析程序。
Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):387-95. doi: 10.1093/nar/12.1part1.387.
3
The gene for the small subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase is located close to the gene for the large subunit in the cyanobacterium Anacystis nidulans 6301.
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Appl Environ Microbiol. 2006 Aug;72(8):5527-36. doi: 10.1128/AEM.02441-05.
4
Molecular characterization of a deep-sea methanotrophic mussel symbiont that carries a RuBisCO gene.携带核酮糖-1,5-二磷酸羧化酶/加氧酶基因的深海甲烷营养型贻贝共生体的分子特征
Mar Biotechnol (NY). 2006 Sep-Oct;8(5):511-20. doi: 10.1007/s10126-005-6135-5. Epub 2006 Jun 12.
5
Anaerobic oxidation of arsenite in Mono Lake water and by a facultative, arsenite-oxidizing chemoautotroph, strain MLHE-1.莫诺湖水中以及兼性砷氧化化学自养菌MLHE-1菌株对亚砷酸盐的厌氧氧化作用。
Appl Environ Microbiol. 2002 Oct;68(10):4795-802. doi: 10.1128/AEM.68.10.4795-4802.2002.
6
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7
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J Bacteriol. 1996 Jan;178(2):347-56. doi: 10.1128/jb.178.2.347-356.1996.
8
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J Bacteriol. 1994 Nov;176(21):6697-706. doi: 10.1128/jb.176.21.6697-6706.1994.
9
Evolution of the Rubisco operon from prokaryotes to algae: structure and analysis of the rbcS gene of the brown alga Pylaiella littoralis.核酮糖-1,5-二磷酸羧化酶/加氧酶操纵子从原核生物到藻类的进化:褐藻小海带(Pylaiella littoralis)rbcS基因的结构与分析
Plant Mol Biol. 1991 Oct;17(4):853-63. doi: 10.1007/BF00037066.
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Nucleic Acids Res. 1983 Oct 25;11(20):6957-64. doi: 10.1093/nar/11.20.6957.
4
The function of the small subunits of ribulose bisphosphate carboxylase-oxygenase.核酮糖二磷酸羧化酶-加氧酶小亚基的功能。
J Biol Chem. 1983 Jun 25;258(12):7514-8.
5
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Annu Rev Biochem. 1983;52:507-35. doi: 10.1146/annurev.bi.52.070183.002451.
6
Positive control of transcription initiation in bacteria.细菌中转录起始的正调控
Annu Rev Genet. 1984;18:173-206. doi: 10.1146/annurev.ge.18.120184.001133.
7
Supercoil sequencing: a fast and simple method for sequencing plasmid DNA.超螺旋测序:一种用于质粒DNA测序的快速简便方法。
DNA. 1985 Apr;4(2):165-70. doi: 10.1089/dna.1985.4.165.
8
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Proc Natl Acad Sci U S A. 1985 Sep;82(18):6100-3. doi: 10.1073/pnas.82.18.6100.
9
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Biochem Biophys Res Commun. 1985 Jan 31;126(2):698-704. doi: 10.1016/0006-291x(85)90241-4.
10
Analysis of E. coli promoter sequences.大肠杆菌启动子序列分析。
Nucleic Acids Res. 1987 Mar 11;15(5):2343-61. doi: 10.1093/nar/15.5.2343.