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转录调控的复杂动力学

Complex dynamics of transcription regulation.

作者信息

Stavreva Diana A, Varticovski Lyuba, Hager Gordon L

机构信息

Laboratory of Receptor Biology and Gene Expression, Building 41, B507, 41 Library Dr., National Cancer Institute, NIH, Bethesda, MD 20892, USA.

出版信息

Biochim Biophys Acta. 2012 Jul;1819(7):657-66. doi: 10.1016/j.bbagrm.2012.03.004. Epub 2012 Mar 28.

DOI:10.1016/j.bbagrm.2012.03.004
PMID:22484099
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3371156/
Abstract

Transcription is a tightly regulated cellular function which can be triggered by endogenous (intrinsic) or exogenous (extrinsic) signals. The development of novel techniques to examine the dynamic behavior of transcription factors and the analysis of transcriptional activity at the single cell level with increased temporal resolution has revealed unexpected elements of stochasticity and dynamics of this process. Emerging research reveals a complex picture, wherein a wide range of time scales and temporal transcription patterns overlap to generate transcriptional programs. The challenge now is to develop a perspective that can guide us to common underlying mechanisms, and consolidate these findings. Here we review the recent literature on temporal dynamics and stochastic gene regulation patterns governed by intrinsic or extrinsic signals, utilizing the glucocorticoid receptor (GR)-mediated transcriptional model to illustrate commonality of these emerging concepts. This article is part of a Special Issue entitled: Chromatin in time and space.

摘要

转录是一种受到严格调控的细胞功能,可由内源性(固有)或外源性(外在)信号触发。用于检测转录因子动态行为的新技术的发展以及在单细胞水平上以更高的时间分辨率对转录活性进行分析,揭示了这一过程中意想不到的随机性和动态性元素。新兴研究揭示了一幅复杂的图景,其中广泛的时间尺度和时间转录模式相互重叠以产生转录程序。现在的挑战是形成一种观点,能够引导我们找到共同的潜在机制,并整合这些发现。在这里,我们回顾了近期关于由内源性或外源性信号控制的时间动态和随机基因调控模式的文献,利用糖皮质激素受体(GR)介导的转录模型来说明这些新兴概念的共性。本文是名为:“时空染色质”的特刊的一部分。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a8f1/3371156/bc763ec89000/nihms371021f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a8f1/3371156/ce78e28b3383/nihms371021f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a8f1/3371156/681bb4c20c1a/nihms371021f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a8f1/3371156/bc763ec89000/nihms371021f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a8f1/3371156/ce78e28b3383/nihms371021f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a8f1/3371156/681bb4c20c1a/nihms371021f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a8f1/3371156/bc763ec89000/nihms371021f3.jpg

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本文引用的文献

1
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Methods Mol Biol. 2012;833:177-200. doi: 10.1007/978-1-61779-477-3_12.
2
Monitoring dynamic binding of chromatin proteins in vivo by fluorescence recovery after photobleaching.通过光漂白后荧光恢复在体内监测染色质蛋白的动态结合
Methods Mol Biol. 2012;833:153-76. doi: 10.1007/978-1-61779-477-3_11.
3
Cryptochromes mediate rhythmic repression of the glucocorticoid receptor.隐花色素介导糖皮质激素受体的节律性抑制。
Nature. 2011 Dec 14;480(7378):552-6. doi: 10.1038/nature10700.
4
Impact of chromatin structure on PR signaling: transition from local to global analysis.染色质结构对 PR 信号转导的影响:从局部分析到全局分析的转变。
Mol Cell Endocrinol. 2012 Jun 24;357(1-2):30-6. doi: 10.1016/j.mce.2011.09.006. Epub 2011 Sep 21.
5
What do expression dynamics tell us about the mechanism of transcription?表达动态告诉了我们关于转录机制的什么信息?
Curr Opin Genet Dev. 2011 Oct;21(5):591-9. doi: 10.1016/j.gde.2011.07.010. Epub 2011 Aug 19.
6
Epigenetic programming of the HPA axis: early life decides.HPA 轴的表观遗传编程:生命早期决定。
Stress. 2011 Nov;14(6):581-9. doi: 10.3109/10253890.2011.602146. Epub 2011 Aug 19.
7
Dynamic exchange at regulatory elements during chromatin remodeling underlies assisted loading mechanism.动态交换在染色质重塑过程中的调控元件,为辅助加载机制提供了基础。
Cell. 2011 Aug 19;146(4):544-54. doi: 10.1016/j.cell.2011.07.006. Epub 2011 Aug 11.
8
Anabolic effects of intermittent PTH on osteoblasts.甲状旁腺激素对成骨细胞的合成代谢作用。
Curr Mol Pharmacol. 2012 Jun;5(2):127-34.
9
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Proc Natl Acad Sci U S A. 2011 Jul 19;108(29):12167-72. doi: 10.1073/pnas.1018832108. Epub 2011 Jul 5.
10
Decoding GnRH neurohormone pulse frequency by convergent signalling modules.通过汇聚信号模块解码 GnRH 神经激素脉冲频率。
J R Soc Interface. 2012 Jan 7;9(66):170-82. doi: 10.1098/rsif.2011.0215. Epub 2011 Jun 15.