Department of Science, Systems, and Models, Roskilde University, Roskilde, Denmark.
J Biol Chem. 2012 May 25;287(22):18451-8. doi: 10.1074/jbc.M111.334946. Epub 2012 Apr 9.
The transient kinetic behavior of enzyme reactions prior to the establishment of steady state is a major source of mechanistic information, yet this approach has not been utilized for cellulases acting on their natural substrate, insoluble cellulose. Here, we elucidate the pre-steady-state regime for the exo-acting cellulase Cel7A using amperometric biosensors and an explicit model for processive hydrolysis of cellulose. This analysis allows the identification of a pseudo-steady-state period and quantification of a processivity number as well as rate constants for the formation of a threaded enzyme complex, processive hydrolysis, and dissociation, respectively. These kinetic parameters elucidate limiting factors in the cellulolytic process. We concluded, for example, that Cel7A cleaves about four glycosidic bonds/s during processive hydrolysis. However, the results suggest that stalling the processive movement and low off-rates result in a specific activity at pseudo-steady state that is 10-25-fold lower. It follows that the dissociation of the enzyme-substrate complex (half-time of ~30 s) is rate-limiting for the investigated system. We suggest that this approach can be useful in attempts to unveil fundamental reasons for the distinctive variability in hydrolytic activity found in different cellulase-substrate systems.
在达到稳态之前,酶反应的瞬态动力学行为是获取机制信息的主要来源,但这种方法尚未应用于作用于天然底物不溶性纤维素的纤维素酶。在这里,我们使用电流型生物传感器和纤维素连续水解的显式模型阐明了外切型纤维素酶 Cel7A 的预稳态机制。该分析可以识别准稳态阶段,并分别量化进程数以及形成螺纹酶复合物、连续水解和解离的速率常数。这些动力学参数阐明了纤维素酶解过程中的限制因素。例如,我们得出结论,Cel7A 在连续水解过程中大约每秒钟切割四个糖苷键。然而,结果表明,连续运动的停顿和低的脱离速率导致准稳态下的比活度降低了 10-25 倍。因此,酶-底物复合物的解离(半衰期约为 30 秒)是所研究体系的限速步骤。我们认为,这种方法可能有助于揭示不同纤维素酶-底物体系中水解活性差异的基本原因。