Petrášek Zdeněk, Nidetzky Bernd
Institute of Biotechnology and Biochemical Engineering, Graz University of Technology, Graz, Austria.
Austrian Centre of Industrial Biotechnology, Graz, Austria.
Biotechnol Bioeng. 2025 Apr;122(4):895-907. doi: 10.1002/bit.28921. Epub 2025 Jan 6.
The enzymatic reaction kinetics on cellulose and other solid substrates is limited by the access of the enzyme to the reactive substrate sites. We introduce a general model in which the reaction rate is determined by the active surface area, and the resulting kinetics consequently reflects the evolving relationship between the exposed substrate surface and the remaining substrate volume. Two factors influencing the overall surface-to-volume ratio are considered: the shape of the substrate particles, characterized by a single numerical parameter related to its dimensionality, and the distribution of the particle sizes. The model is formulated in a form of simple analytical equations, enabling fast and efficient application to experimental data, and facilitating its incorporation into more detailed and complex models. The application of the introduced formalism exploring its potential to account for the observed reaction rate is demonstrated on two examples: the derivation of particle size distribution from experimentally determined reaction kinetics, and the prediction of reaction slowdown from experimental particle size distribution.
纤维素及其他固体底物上的酶促反应动力学受酶与反应性底物位点接触情况的限制。我们引入了一个通用模型,其中反应速率由活性表面积决定,由此产生的动力学相应地反映了暴露的底物表面与剩余底物体积之间不断变化的关系。考虑了影响总体表面积与体积比的两个因素:底物颗粒的形状,由与其维度相关的单个数值参数表征,以及颗粒大小的分布。该模型以简单解析方程的形式构建,能够快速有效地应用于实验数据,并便于将其纳入更详细和复杂的模型中。通过两个例子展示了所引入形式主义的应用,探索其解释观测反应速率的潜力:从实验测定的反应动力学推导颗粒大小分布,以及根据实验颗粒大小分布预测反应减缓。