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An evaluation of Poisson-Boltzmann electrostatic free energy calculations through comparison with experimental mutagenesis data.通过与实验诱变数据的比较评估泊松-玻尔兹曼静电自由能计算。
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Automated computational framework for the analysis of electrostatic similarities of proteins.蛋白质静电相似性分析的自动化计算框架。
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A new generation of potent complement inhibitors of the Compstatin family.新一代强效补体抑制剂 Compstatin 家族。
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Electrostatic clustering and free energy calculations provide a foundation for protein design and optimization.静电聚类和自由能计算为蛋白质设计和优化提供了基础。
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Discovery of entry inhibitors for HIV-1 via a new de novo protein design framework.通过新的从头蛋白质设计框架发现 HIV-1 的进入抑制剂。
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Species specificity of the complement inhibitor compstatin investigated by all-atom molecular dynamics simulations.运用全原子分子动力学模拟研究补体抑制剂 compstatin 的种属特异性。
Proteins. 2010 Sep;78(12):2655-67. doi: 10.1002/prot.22780.
7
Selective hexapeptide agonists and antagonists for human complement C3a receptor.选择性六肽激动剂和拮抗剂用于人类补体 C3a 受体。
J Med Chem. 2010 Jul 8;53(13):4938-48. doi: 10.1021/jm1003705.
8
New compstatin variants through two de novo protein design frameworks.通过两种从头蛋白质设计框架得到新型 Compstatin 变体。
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Reconstitution and engineering of apoptotic protein interactions on the bacterial cell surface.细菌细胞表面凋亡蛋白相互作用的重构与工程化
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10
Complement factors C3a and C5a have distinct hemodynamic effects in the rat.补体因子C3a和C5a在大鼠中具有不同的血流动力学效应。
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具有 C3a 受体激动剂和拮抗剂活性的从头肽设计:理论预测和实验验证。

De novo peptide design with C3a receptor agonist and antagonist activities: theoretical predictions and experimental validation.

机构信息

Department of Chemical and Biological Engineering, Princeton University, Princeton, New Jersey 08544, USA.

出版信息

J Med Chem. 2012 May 10;55(9):4159-68. doi: 10.1021/jm201609k. Epub 2012 Apr 20.

DOI:10.1021/jm201609k
PMID:22500977
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3349770/
Abstract

Targeting the complement component 3a receptor (C3aR) with selective agonists or antagonists is believed to be a viable therapeutic option for several diseases such as stroke, heart attack, reperfusion injuries, and rheumatoid arthritis. We designed a number of agonists, partial agonists, and antagonists of C3aR using our two-stage de novo protein design framework. Of the peptides tested using a degranulation assay in C3aR-transfected rat basophilic leukemia cells, two were prominent agonists (EC(50) values of 25.3 and 66.2 nM) and two others were partial agonists (IC(50) values of 15.4 and 26.1 nM). Further testing of these lead compounds in a calcium flux assay in U937 cells yielded similar results although with reduced potencies compared to transfected cells. The partial agonists also displayed full antagonist activity when tested in a C3aR inhibition assay. In addition, the electrostatic potential profile was shown to potentially discriminate between full agonists and partial agonists.

摘要

靶向补体成分 3a 受体(C3aR)的选择性激动剂或拮抗剂被认为是治疗中风、心脏病发作、再灌注损伤和类风湿关节炎等多种疾病的可行治疗选择。我们使用我们的两阶段从头蛋白质设计框架设计了许多 C3aR 的激动剂、部分激动剂和拮抗剂。在转染 C3aR 的大鼠嗜碱性白血病细胞中使用脱颗粒测定法测试的肽中,有两种是突出的激动剂(EC(50)值为 25.3 和 66.2 nM),另外两种是部分激动剂(IC(50)值为 15.4 和 26.1 nM)。在 U937 细胞中的钙通量测定中进一步测试这些先导化合物得到了类似的结果,尽管与转染细胞相比,效力降低。当在 C3aR 抑制测定中测试时,部分激动剂也显示出完全拮抗剂活性。此外,静电势分布被证明可以潜在地区分完全激动剂和部分激动剂。