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核糖开关的分子识别与功能。

Molecular recognition and function of riboswitches.

机构信息

Department of Biochemistry and Molecular Pharmacology, New York University School of Medicine, 550 First Ave., MSB-393, New York, NY 10016, USA.

出版信息

Curr Opin Struct Biol. 2012 Jun;22(3):279-86. doi: 10.1016/j.sbi.2012.04.005. Epub 2012 May 12.

DOI:10.1016/j.sbi.2012.04.005
PMID:22579413
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3744878/
Abstract

Regulatory mRNAs elements termed riboswitches respond to elevated concentrations of cellular metabolites by modulating expression of associated genes. Riboswitches attain their high metabolite selectivity by capitalizing on the intrinsic tertiary structures of their sensor domains. Over the years, riboswitch structure and folding have been amongst the most researched topics in the RNA field. Most recently, novel structures of single-ligand and cooperative double-ligand sensors have broadened our knowledge of architectural and molecular recognition principles exploited by riboswitches. The structural information has been complemented by extensive folding studies, which have provided several important clues on the formation of ligand-competent conformations and mechanisms of ligand discrimination. These studies have greatly improved our understanding of molecular events in riboswitch-mediated gene expression control and provided the molecular basis for intervention into riboswitch-controlled genetic circuits.

摘要

调控 mRNA 元件,称为核糖开关,通过调节相关基因的表达来响应细胞代谢物浓度的升高。核糖开关通过利用其传感器结构域的内在三级结构来实现高代谢物选择性。多年来,核糖开关的结构和折叠一直是 RNA 领域研究最多的课题之一。最近,单配体和协同双配体传感器的新型结构拓宽了我们对核糖开关利用的结构和分子识别原理的认识。结构信息得到了广泛折叠研究的补充,这些研究提供了关于配体竞争构象形成和配体识别机制的几个重要线索。这些研究极大地提高了我们对核糖开关介导的基因表达控制中分子事件的理解,并为干预核糖开关控制的遗传回路提供了分子基础。

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本文引用的文献

1
Widespread genetic switches and toxicity resistance proteins for fluoride.氟化物的广泛遗传开关和毒性抗性蛋白。
Science. 2012 Jan 13;335(6065):233-235. doi: 10.1126/science.1215063. Epub 2011 Dec 22.
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Prospects for riboswitch discovery and analysis.核糖开关的发现和分析前景。
Mol Cell. 2011 Sep 16;43(6):867-79. doi: 10.1016/j.molcel.2011.08.024.
3
The structure of a tetrahydrofolate-sensing riboswitch reveals two ligand binding sites in a single aptamer.四氢叶酸感应核糖开关的结构揭示了单个适体中存在两个配体结合位点。
Structure. 2011 Oct 12;19(10):1413-23. doi: 10.1016/j.str.2011.06.019. Epub 2011 Sep 8.
4
Long-range pseudoknot interactions dictate the regulatory response in the tetrahydrofolate riboswitch.长程假结相互作用决定了四氢叶酸核糖开关的调控反应。
Proc Natl Acad Sci U S A. 2011 Sep 6;108(36):14801-6. doi: 10.1073/pnas.1111701108. Epub 2011 Aug 22.
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Structural principles of nucleoside selectivity in a 2'-deoxyguanosine riboswitch.2'-脱氧鸟苷核糖开关核苷选择性的结构原理。
Nat Chem Biol. 2011 Aug 14;7(10):748-55. doi: 10.1038/nchembio.631.
6
Differential analogue binding by two classes of c-di-GMP riboswitches.两类 c-di-GMP 核糖开关的差异模拟结合。
J Am Chem Soc. 2011 Oct 5;133(39):15578-92. doi: 10.1021/ja204650q. Epub 2011 Sep 8.
7
Molecular sensing by the aptamer domain of the FMN riboswitch: a general model for ligand binding by conformational selection.FMN 核糖开关的适体结构域的分子感应:构象选择结合配体的通用模型。
Nucleic Acids Res. 2011 Oct;39(19):8586-98. doi: 10.1093/nar/gkr565. Epub 2011 Jul 10.
8
Constitutive regulatory activity of an evolutionarily excluded riboswitch variant.进化排除的核糖开关变体的组成型调节活性。
J Biol Chem. 2011 Aug 5;286(31):27406-15. doi: 10.1074/jbc.M111.229047. Epub 2011 Jun 15.
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Comparison of a preQ1 riboswitch aptamer in metabolite-bound and free states with implications for gene regulation.比较代谢物结合态和游离态前 Q1 核糖体开关适体,探讨其对基因调控的影响。
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Structure and dynamics of the deoxyguanosine-sensing riboswitch studied by NMR-spectroscopy.通过 NMR 光谱研究脱氧鸟苷感应核糖开关的结构和动态。
Nucleic Acids Res. 2011 Aug;39(15):6802-12. doi: 10.1093/nar/gkr238. Epub 2011 May 16.