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临床蛋白质科学中生物库资源的标准化和利用——以新兴应用为例。

Standardization and utilization of biobank resources in clinical protein science with examples of emerging applications.

机构信息

Clinical Protein Science & Imaging, Biomedical Center, Department of Measurement Technology and Industrial Electrical Engineering, Lund University, BMC C13, SE-221 84 Lund, Sweden.

出版信息

J Proteome Res. 2012 Nov 2;11(11):5124-34. doi: 10.1021/pr300185k. Epub 2012 May 25.

Abstract

Biobanks are a major resource to access and measure biological constituents that can be used to monitor the status of health and disease, both in unique individual samples and within populations. Most "omic" activities rely on access to these collections of stored samples to provide the basis for establishing the ranges and frequencies of expression. Furthermore, information about the relative abundance and form of protein constituents found in stored samples provides an important historical index for comparative studies of inherited, epidemic, and developing disease. Standardizations of sample quality, form, and analysis are an important unmet need and requirement for gaining the full benefit from collected samples. Coupled to this standard is the provision of annotation describing clinical status and metadata of measurements of clinical phenotype that characterizes the sample. Today we have not yet achieved consensus on how to collect, manage, and build biobank archives in order to reach goals where these efforts are translated into value for the patient. Several initiatives (OBBR, ISBER, BBMRI) that disseminate best practice examples for biobanking are expected to play an important role in ensuring the need to preserve the sample integrity of biosamples stored for periods that reach one or several decades. These developments will be of great value and importance to programs such as the Chromosome Human Protein Project (C-HPP) that will associate protein expression in healthy and disease states with genetic foci along of each of the human chromosomes.

摘要

生物样本库是获取和测量生物成分的主要资源,可用于监测个体样本和人群的健康和疾病状况。大多数“组学”活动都依赖于这些存储样本的集合,为确定表达的范围和频率提供基础。此外,关于存储样本中发现的蛋白质成分的相对丰度和形式的信息为遗传性、流行性和发展性疾病的比较研究提供了一个重要的历史指标。样本质量、形式和分析的标准化是一个未满足的重要需求,也是从收集的样本中获得全部收益的必要条件。这一标准还规定了描述临床状态和临床表型测量元数据的注释,该元数据可用于描述样本。目前,我们尚未就如何收集、管理和构建生物库档案达成共识,以便将这些努力转化为患者的价值。一些倡议(OBBR、ISBER、BBMRI)正在传播生物库的最佳实践范例,预计将在确保为存储长达数十年的生物样本的样本完整性方面发挥重要作用。这些发展对于染色体人类蛋白质计划(C-HPP)等项目将具有巨大的价值和重要性,该计划将把健康和疾病状态下的蛋白质表达与每条人类染色体上的遗传焦点联系起来。

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