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利用光谱学和分子动力学模拟研究染料木黄酮-血红蛋白的结合特性。

Characterization of diadzein-hemoglobin binding using optical spectroscopy and molecular dynamics simulations.

机构信息

Department of Chemistry, Tougaloo College, 500 W County Line Road, Tougaloo, MS 39174, USA. bsgupta

出版信息

Int J Biol Macromol. 2012 Oct;51(3):250-8. doi: 10.1016/j.ijbiomac.2012.05.013. Epub 2012 May 16.

Abstract

The present study establishes the effectiveness of natural drug delivery mechanisms and investigates the interactions between drug and its natural carrier. The binding between the isoflavone diadzein (DZN) and the natural carrier hemoglobin (HbA) was studied using optical spectroscopy and molecular dynamics simulations. The inherent fluorescence emission characteristics of DZN along with that of tryptophan (Trp) residues of the protein HbA were exploited to elucidate the binding location and other relevant parameters of the drug inside its delivery vehicle HbA. Stern-Volmer studies at different temperatures indicate that static along with collisional quenching mechanisms are responsible for the quenching of protein fluorescence by the drug. Molecular dynamics and docking studies supported the hydrophobic interactions between ligand and protein, as was observed from spectroscopy. DZN binds between the subunits of HbA, ∼15 Å away from the closest heme group of chain α1, emphasizing the fact that the drug does not interfere with oxygen binding site of HbA.

摘要

本研究确立了天然药物输送机制的有效性,并研究了药物与其天然载体之间的相互作用。本研究使用光谱学和分子动力学模拟研究了异黄酮染料木黄酮(DZN)与其天然载体血红蛋白(HbA)之间的结合。利用 DZN 的固有荧光发射特性以及蛋白质 HbA 中色氨酸(Trp)残基的荧光发射特性,阐明了药物在其输送载体 HbA 内的结合位置和其他相关参数。在不同温度下的 Stern-Volmer 研究表明,药物对蛋白质荧光的猝灭是由静态和碰撞猝灭机制共同作用的结果。分子动力学和对接研究支持配体与蛋白质之间的疏水相互作用,这与光谱学的观察结果一致。DZN 结合在 HbA 的亚基之间,距离链α1的最近血红素基团约 15 Å,这强调了药物不干扰 HbA 的氧结合位点这一事实。

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