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活细胞中蛋白质折叠动力学的温度依赖性。

Temperature dependence of protein folding kinetics in living cells.

机构信息

Department of Physics, Chemical and Biomolecular Engineering, and Chemistry and Center for Biophysics and Computational Biology, University of Illinois, Urbana, IL 61801, USA.

出版信息

Proc Natl Acad Sci U S A. 2012 Oct 30;109(44):17863-7. doi: 10.1073/pnas.1201797109. Epub 2012 Jun 4.

Abstract

We measure the stability and folding rate of a mutant of the enzyme phosphoglycerate kinase (PGK) inside bone tissue cells as a function of temperature from 38 to 48 °C. To facilitate measurement in individual living cells, we developed a rapid laser temperature stepping method capable of measuring complete thermal melts and kinetic traces in about two min. We find that this method yields improved thermal melts compared to heating a sample chamber or microscope stage. By comparing results for six cells with in vitro data, we show that the protein is stabilized by about 6 kJ/mole in the cytoplasm, but the temperature dependence of folding kinetics is similar to in vitro. The main difference is a slightly steeper temperature dependence of the folding rate in some cells that can be rationalized in terms of temperature-dependent crowding, local viscosity, or hydrophobicity. The observed rate coefficients can be fitted within measurement uncertainty by an effective two-state model, even though PGK folds by a multistate mechanism. We validate the effective two-state model with a three-state free energy landscape of PGK to illustrate that the effective fitting parameters can represent a more complex underlying free energy landscape.

摘要

我们测量了作为温度函数的骨组织细胞内磷酸甘油酸激酶 (PGK) 突变体的稳定性和折叠率,温度范围为 38 至 48°C。为了便于在单个活细胞中进行测量,我们开发了一种快速激光温度阶跃方法,能够在大约两分钟内测量完整的热融解和动力学轨迹。我们发现,与加热样品室或显微镜载物台相比,这种方法可以得到更好的热融解结果。通过将六个细胞的结果与体外数据进行比较,我们表明该蛋白在细胞质中稳定约 6 kJ/mol,但折叠动力学的温度依赖性与体外相似。主要区别在于一些细胞中折叠速率的温度依赖性略高,这可以根据温度依赖性拥挤、局部粘度或疏水性来合理化。观察到的速率系数可以在测量不确定度内通过有效两态模型拟合,即使 PGK 通过多态机制折叠。我们使用 PGK 的三态自由能景观验证了有效两态模型,以说明有效拟合参数可以代表更复杂的潜在自由能景观。

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本文引用的文献

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How fast-folding proteins fold.快速折叠蛋白如何折叠。
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Protein crowding tunes protein stability.蛋白质拥挤调节蛋白质稳定性。
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