Department of Food Science and Biotechnology, Sungkyunkwan University, Jangan-gu, Suwon, Gyeonggi-do 440-746, Republic of Korea.
Korea Research Institute of Bioscience and Biotechnology (KRIBB), PO Box 115, Yuseong, Daejeon 306-809, Republic of Korea.
Int J Syst Evol Microbiol. 2013 Mar;63(Pt 3):995-1000. doi: 10.1099/ijs.0.040352-0. Epub 2012 Jun 8.
A Gram-stain-negative, aerobic, non-flagellated, non-gliding, rod-shaped bacterial strain, D1-y4(T), was isolated from a tidal flat sediment of the South Sea in South Korea and subjected to a polyphasic study. Strain D1-y4(T) grew optimally at 25 °C, at pH 7.0-7.5 and in the presence of 2-3 % (w/v) NaCl. Phylogenetic trees based on 16S rRNA gene sequences revealed that strain D1-y4(T) belonged to the genus Gaetbulibacter, joining the type strain of Gaetbulibacter marinus, with which it exhibited 97.8 % similarity. Sequence similarities to Gaetbulibacter saemankumensis SMK-12(T) and Gaetbulibacter aestuarii KYW382(T) were 96.5 and 96.2 %, respectively. Strain D1-y4(T) contained MK-6 as the predominant menaquionone and iso-C15 : 0, iso-C15 : 1 G and anteiso-C15 : 0 as the major fatty acids. The major polar lipids were phosphatidylethanolamine and one unidentified lipid. The DNA G+C content of strain D1-y4(T) was 34.6 mol% and its mean DNA-DNA relatedness value with G. marinus KCTC 23046(T) was 7 %. The phylogenetic and genetic distinctiveness and differential phenotypic properties revealed that strain D1-y4(T) is distinguishable from the three recognized Gaetbulibacter species. On the basis of the data presented here, strain D1-y4(T) is considered to represent a novel species of the genus Gaetbulibacter, for which the name Gaetbulibacter lutimaris sp. nov. is proposed. The type strain is D1-y4(T) ( = KCTC 23716(T) = CCUG 61504(T)).
一株革兰氏阴性、需氧、无鞭毛、不滑行、杆状的细菌菌株 D1-y4(T),从韩国南海的潮滩沉积物中分离出来,并进行了多相研究。菌株 D1-y4(T) 在 25°C、pH7.0-7.5 和 2-3%(w/v)NaCl 存在下生长最佳。基于 16S rRNA 基因序列的系统发育树表明,菌株 D1-y4(T) 属于 Gaetbulibacter 属,与 Gaetbulibacter marinus 型菌株聚在一起,相似度为 97.8%。与 Gaetbulibacter saemankumensis SMK-12(T) 和 Gaetbulibacter aestuarii KYW382(T) 的序列相似性分别为 96.5%和 96.2%。菌株 D1-y4(T) 含有 MK-6 作为主要的甲萘醌,iso-C15:0、iso-C15:1 G 和 anteiso-C15:0 作为主要的脂肪酸。主要的极性脂是磷脂酰乙醇胺和一种未鉴定的脂。菌株 D1-y4(T) 的 DNA G+C 含量为 34.6 mol%,与 G. marinus KCTC 23046(T) 的平均 DNA-DNA 相关值为 7%。系统发育和遗传特征以及表型特征的差异表明,菌株 D1-y4(T) 与已鉴定的三种 Gaetbulibacter 物种不同。根据目前提供的数据,菌株 D1-y4(T) 被认为代表 Gaetbulibacter 属的一个新种,提议将其命名为 Gaetbulibacter lutimaris sp. nov.。模式菌株为 D1-y4(T)(=KCTC 23716(T)=CCUG 61504(T))。