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滨海沉积中分离得到的新种 Winogradskyella litorisediminis。

Winogradskyella litorisediminis sp. nov., isolated from coastal sediment.

机构信息

University of Science and Technology (UST), 113 Gwahangno, Yuseong, Daejeon, Republic of Korea.

Korea Research Institute of Bioscience and Biotechnology (KRIBB), PO Box 115, Yuseong, Daejeon, Republic of Korea.

出版信息

Int J Syst Evol Microbiol. 2013 May;63(Pt 5):1793-1799. doi: 10.1099/ijs.0.043679-0. Epub 2012 Sep 7.

Abstract

A Gram-staining-negative, non-flagellated, non-gliding, aerobic, rod-shaped bacterium, designated DPS-8(T), was isolated from coastal sediment of Geoje island in the South Sea, South Korea, and subjected to a polyphasic study. Strain DPS-8(T) grew optimally at 30 °C, at pH 7.0-7.5 and in the presence of 2 % (w/v) NaCl. A neighbour-joining phylogenetic tree based on 16S rRNA gene sequences showed that strain DPS-8(T) joined the clade comprising the type strains of Winogradskyella species with a high bootstrap resampling value of 93.5 %. Phylogenetic trees constructed using maximum-likelihood and maximum-parsimony algorithms revealed that strain DPS-8(T) belonged to the genus Winogradskyella. Strain DPS-8(T) exhibited 94.1-96.5 % 16S rRNA gene sequence similarity to the type strains of species of the genus Winogradskyella. Strain DPS-8(T) contained MK-6 as the predominant menaquinone and iso-C15 : 1 G, iso-C15 : 0, iso-C17 : 0 3-OH and C16 : 1ω7c and/or iso-C15 : 0 2-OH as the major fatty acids. The major polar lipids of strain DPS-8(T) were phosphatidylethanolamine and two unidentified lipids. The DNA G+C content of strain DPS-8(T) was 34.7 mol%. Differential phenotypic properties, together with its phylogenetic distinctiveness, revealed that strain DPS-8(T) is separate from recognized species of the genus Winogradskyella. On the basis of the data presented, strain DPS-8(T) is considered to represent a novel species of the genus Winogradskyella, for which the name Winogradskyella litorisediminis sp. nov. is proposed. The type strain is DPS-8(T) ( = KCTC 32110(T) = CCUG 62215(T)).

摘要

一株革兰氏阴性、无鞭毛、不滑行、需氧、杆状细菌,被命名为 DPS-8(T),从韩国南海巨济岛的沿海沉积物中分离得到,并进行了多相研究。菌株 DPS-8(T) 在 30°C、pH7.0-7.5 和 2%(w/v)NaCl 存在下生长最佳。基于 16S rRNA 基因序列的邻接法系统发育树显示,菌株 DPS-8(T) 与 Winogradskyella 属的模式菌株聚在一起,自举值为 93.5%。使用最大似然法和最大简约法构建的系统发育树表明,菌株 DPS-8(T) 属于 Winogradskyella 属。菌株 DPS-8(T) 与 Winogradskyella 属的模式菌株的 16S rRNA 基因序列相似性为 94.1-96.5%。菌株 DPS-8(T) 含有 MK-6 作为主要的menaquinone,以及 iso-C15:1 G、iso-C15:0、iso-C17:0 3-OH 和 C16:1ω7c 和/或 iso-C15:0 2-OH 作为主要脂肪酸。菌株 DPS-8(T) 的主要极性脂为磷脂酰乙醇胺和两种未鉴定的脂类。菌株 DPS-8(T) 的 DNA G+C 含量为 34.7mol%。表型差异特征以及其系统发育上的独特性表明,菌株 DPS-8(T) 与公认的 Winogradskyella 属的种不同。基于所提出的数据,菌株 DPS-8(T) 被认为是代表 Winogradskyella 属的一个新种,命名为 Winogradskyella litorisediminis sp. nov.。模式菌株为 DPS-8(T)( = KCTC 32110(T) = CCUG 62215(T))。

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