固氮共生菌Bradyrhizobium elkanii 587 的基因组草图序列
Draft genome sequence of the nitrogen-fixing symbiotic bacterium Bradyrhizobium elkanii 587.
机构信息
Department of Biology Applied to Agriculture, FCAV/UNESP, Jaboticabal, SP, Brazil.
出版信息
J Bacteriol. 2012 Jul;194(13):3547-8. doi: 10.1128/JB.00563-12.
Abstract
The draft sequence of the genome of Bradyrhizobium elkanii 587 is presented. This was obtained using Illumina Next-Gen DNA sequencing combined with Sanger sequencing. Genes for the pathways involved in biological nitrogen fixation (the nif gene cluster), nod genes including nodABC, and genes for the type III protein secretion system (T3SS) are present.
摘要
布拉德氏固氮菌 587 基因组草图序列已被呈现。此序列是通过 Illumina Next-Gen DNA 测序与 Sanger 测序相结合而获得的。生物固氮途径（nif 基因簇）、包括 nodABC 的 nod 基因以及 III 型蛋白分泌系统（T3SS）的基因都存在。
相似文献
1
Draft genome sequence of the nitrogen-fixing symbiotic bacterium Bradyrhizobium elkanii 587.固氮共生菌Bradyrhizobium elkanii 587 的基因组草图序列
J Bacteriol. 2012 Jul;194(13):3547-8. doi: 10.1128/JB.00563-12.
2
Genome analysis suggests that the soil oligotrophic bacterium Agromonas oligotrophica (Bradyrhizobium oligotrophicum) is a nitrogen-fixing symbiont of Aeschynomene indica.基因组分析表明，土壤寡养菌寡养单胞菌（慢生根瘤菌）是 Aeschynomene indica 的固氮共生体。
Appl Environ Microbiol. 2013 Apr;79(8):2542-51. doi: 10.1128/AEM.00009-13. Epub 2013 Feb 8.
3
Genome analysis of a novel Bradyrhizobium sp. DOA9 carrying a symbiotic plasmid.携带共生质粒的新型慢生根瘤菌DOA9的基因组分析
PLoS One. 2015 Feb 24;10(2):e0117392. doi: 10.1371/journal.pone.0117392. eCollection 2015.
4
Roles of flavonoids and the transcriptional regulator TtsI in the activation of the type III secretion system of Bradyrhizobium elkanii SEMIA587.类黄酮和转录调节因子 TtsI 在Bradyrhizobium elkanii SEMIA587 Ⅲ型分泌系统激活中的作用。
Microbiology (Reading). 2011 Mar;157(Pt 3):627-635. doi: 10.1099/mic.0.040873-0. Epub 2010 Nov 25.
5
Draft genome sequence of Bradyrhizobium sp. strain BR 3262, an effective microsymbiont recommended for cowpea inoculation in Brazil.慢生根瘤菌属菌株BR 3262的基因组序列草图，该菌株是巴西推荐用于豇豆接种的一种有效的微共生体。
Braz J Microbiol. 2016 Oct-Dec;47(4):783-784. doi: 10.1016/j.bjm.2016.03.001. Epub 2016 Apr 1.
6
Description and complete genome sequence of sp. nov., harbouring photosystem and nitrogen-fixation genes.含有光系统和固氮基因的新种的描述及全基因组序列
Int J Syst Evol Microbiol. 2019 Sep;69(9):2841-2848. doi: 10.1099/ijsem.0.003569.
7
Phylogenies of symbiotic genes of Bradyrhizobium symbionts of legumes of economic and environmental importance in Brazil support the definition of the new symbiovars pachyrhizi and sojae.巴西具有经济和环境重要性的豆科植物慢生根瘤菌共生体的共生基因系统发育支持新共生变种大豆慢生根瘤菌和豇豆慢生根瘤菌的定义。
Syst Appl Microbiol. 2017 Jul;40(5):254-265. doi: 10.1016/j.syapm.2017.04.005. Epub 2017 Jun 7.
8
Evidence of horizontal transfer of symbiotic genes from a Bradyrhizobium japonicum inoculant strain to indigenous diazotrophs Sinorhizobium (Ensifer) fredii and Bradyrhizobium elkanii in a Brazilian Savannah soil.在巴西热带稀树草原土壤中，共生基因从日本慢生根瘤菌接种菌株水平转移至本地固氮菌费氏中华根瘤菌（Ensifer）和埃氏慢生根瘤菌的证据。
Appl Environ Microbiol. 2007 Apr;73(8):2635-43. doi: 10.1128/AEM.01823-06. Epub 2007 Feb 16.
9
Phylogeny of nodulation and nitrogen-fixation genes in Bradyrhizobium: supporting evidence for the theory of monophyletic origin, and spread and maintenance by both horizontal and vertical transfer.根瘤菌中结瘤和固氮基因的系统发育：支持单系起源理论以及通过水平和垂直转移进行传播和维持的证据。
Int J Syst Evol Microbiol. 2011 Dec;61(Pt 12):3052-3067. doi: 10.1099/ijs.0.028803-0. Epub 2011 Feb 25.
10
An Alkane Sulfonate Monooxygenase Is Required for Symbiotic Nitrogen Fixation by (syn. Bradyrhizobium japonicum) USDA110.（syn. Bradyrhizobium japonicum）USDA110 共生固氮需要烷磺酸盐单加氧酶。
Appl Environ Microbiol. 2019 Nov 27;85(24). doi: 10.1128/AEM.01552-19. Print 2019 Dec 15.
引用本文的文献
1
Impact of a G2-EPSPS & GAT Dual Transgenic Glyphosate-Resistant Soybean Line on the Soil Microbial Community under Field Conditions Affected by Glyphosate Application.田间条件下草甘膦施药对 G2-EPSPS 和 GAT 双转基因抗草甘膦大豆根系土壤微生物群落的影响
Microbes Environ. 2020;35(4). doi: 10.1264/jsme2.ME20056.
2
High-quality permanent draft genome sequence of the type strain USDA 76, isolated from (L.) Merr.从（L.）Merr.分离得到的模式菌株USDA 76的高质量永久草图基因组序列
Stand Genomic Sci. 2017 Mar 4;12:26. doi: 10.1186/s40793-017-0238-2. eCollection 2017.
3
Draft Genome Sequence of Tn 33, a Producer of Polyhydroxyalkanoates.
Genome Announc. 2017 Feb 23;5(8):e01502-16. doi: 10.1128/genomeA.01502-16.
4
Whole-Genome Sequence of Bradyrhizobium elkanii Strain UASWS1016, a Potential Symbiotic Biofertilizer for Agriculture.慢生根瘤菌属埃尔坎氏菌菌株UASWS1016的全基因组序列，一种潜在的农业共生生物肥料。
Genome Announc. 2016 Oct 6;4(5):e01095-16. doi: 10.1128/genomeA.01095-16.
5
Whole-Genome Sequence of Bradyrhizobium elkanii Strain UASWS1015, a Highly Ammonia-Tolerant Nitrifying Bacterium.耐高氨硝化细菌埃氏慢生根瘤菌菌株UASWS1015的全基因组序列
Genome Announc. 2016 Mar 10;4(2):e00111-16. doi: 10.1128/genomeA.00111-16.
6
Secretion systems and signal exchange between nitrogen-fixing rhizobia and legumes.固氮根瘤菌与豆科植物之间的分泌系统及信号交换。
Front Plant Sci. 2015 Jul 1;6:491. doi: 10.3389/fpls.2015.00491. eCollection 2015.
7
Commonalities and differences of T3SSs in rhizobia and plant pathogenic bacteria.根瘤菌和植物病原菌 T3SS 的共性和差异。
Front Plant Sci. 2014 Mar 27;5:114. doi: 10.3389/fpls.2014.00114. eCollection 2014.
8
Isolation of novel Afipia septicemium and identification of previously unknown bacteria Bradyrhizobium sp. OHSU_III from blood of patients with poorly defined illnesses.从患有定义不明确疾病的患者血液中分离出新型阿菲波菌和以前未知的慢生根瘤菌属 OHSU_III 细菌。
PLoS One. 2013 Oct 14;8(10):e76142. doi: 10.1371/journal.pone.0076142. eCollection 2013.
本文引用的文献
1
Bacterial RuBisCO is required for efficient Bradyrhizobium/Aeschynomene symbiosis.细菌 RuBisCO 是高效 Bradyrhizobium/Aeschynomene 共生所必需的。
PLoS One. 2011;6(7):e21900. doi: 10.1371/journal.pone.0021900. Epub 2011 Jul 5.
2
Translocation of NopP by Sinorhizobium fredii USDA257 into Vigna unguiculata root nodules.根瘤菌 Sinorhizobium fredii USDA257 将 NopP 易位到豇豆根瘤中。
Appl Environ Microbiol. 2010 Jun;76(11):3758-61. doi: 10.1128/AEM.03122-09. Epub 2010 Apr 9.
3
Genetic organization and functional analysis of the type III secretion system of Bradyrhizobium elkanii.慢生根瘤菌III型分泌系统的遗传组织与功能分析
FEMS Microbiol Lett. 2009 Jun;295(1):88-95. doi: 10.1111/j.1574-6968.2009.01593.x.
4
Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems.根瘤菌属的NGR234菌株拥有大量的分泌系统。
Appl Environ Microbiol. 2009 Jun;75(12):4035-45. doi: 10.1128/AEM.00515-09. Epub 2009 Apr 17.
5
TtsI regulates symbiotic genes in Rhizobium species NGR234 by binding to tts boxes.TtsI通过与tts框结合来调控根瘤菌NGR234中的共生基因。
Mol Microbiol. 2008 May;68(3):736-48. doi: 10.1111/j.1365-2958.2008.06187.x. Epub 2008 Mar 20.
6
Velvet: algorithms for de novo short read assembly using de Bruijn graphs.《天鹅绒：使用德布鲁因图进行从头短读长拼接的算法》
Genome Res. 2008 May;18(5):821-9. doi: 10.1101/gr.074492.107. Epub 2008 Mar 18.
7
The RAST Server: rapid annotations using subsystems technology.RAST服务器：使用子系统技术进行快速注释。
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
8
Bacteriochlorophyll and Photosynthetic Reaction Centers in Rhizobium Strain BTAi 1.根瘤菌 BTAi1 中的细菌叶绿素和光合反应中心
Appl Environ Microbiol. 1990 Nov;56(11):3445-9. doi: 10.1128/aem.56.11.3445-3449.1990.
9
Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110.固氮共生细菌日本慢生根瘤菌USDA110的全基因组序列
DNA Res. 2002 Dec 31;9(6):189-97. doi: 10.1093/dnares/9.6.189.
10
Common soybean inoculant strains in Brazil are members of Bradyrhizobium elkanii.巴西常见的大豆接种菌株是慢生根瘤菌属的成员。
Appl Environ Microbiol. 1993 Dec;59(12):4371-3. doi: 10.1128/aem.59.12.4371-4373.1993.
Zotero 插件