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通过固态 NMR 研究微结晶金属蛋白的结构和骨架动力学。

Structure and backbone dynamics of a microcrystalline metalloprotein by solid-state NMR.

机构信息

Centre de Résonance Magnétique Nucléaire à Très Hauts Champs, Unité Mixte de Recherche 5280 Centre National de la Recherche Scientifique/Ecole Normale Supérieure de Lyon, Université Claude Bernard Lyon 1, 5 rue de la Doua, 69100 Villeurbanne, France.

出版信息

Proc Natl Acad Sci U S A. 2012 Jul 10;109(28):11095-100. doi: 10.1073/pnas.1204515109. Epub 2012 Jun 21.

Abstract

We introduce a new approach to improve structural and dynamical determination of large metalloproteins using solid-state nuclear magnetic resonance (NMR) with (1)H detection under ultrafast magic angle spinning (MAS). The approach is based on the rapid and sensitive acquisition of an extensive set of (15)N and (13)C nuclear relaxation rates. The system on which we demonstrate these methods is the enzyme Cu, Zn superoxide dismutase (SOD), which coordinates a Cu ion available either in Cu(+) (diamagnetic) or Cu(2+) (paramagnetic) form. Paramagnetic relaxation enhancements are obtained from the difference in rates measured in the two forms and are employed as structural constraints for the determination of the protein structure. When added to (1)H-(1)H distance restraints, they are shown to yield a twofold improvement of the precision of the structure. Site-specific order parameters and timescales of motion are obtained by a gaussian axial fluctuation (GAF) analysis of the relaxation rates of the diamagnetic molecule, and interpreted in relation to backbone structure and metal binding. Timescales for motion are found to be in the range of the overall correlation time in solution, where internal motions characterized here would not be observable.

摘要

我们介绍了一种新的方法,使用(1)H 检测的固态核磁共振(NMR),在超快魔角旋转(MAS)下提高了对大型金属蛋白的结构和动力学的测定。该方法基于广泛的(15)N 和(13)C 核弛豫率的快速和灵敏获取。我们在其上演示这些方法的系统是酶 Cu,Zn 超氧化物歧化酶(SOD),它协调一个 Cu 离子,该离子可以处于 Cu(+)(抗磁性)或 Cu(2+)(顺磁性)形式。顺磁弛豫增强是从两种形式测量的速率差异中获得的,并用作确定蛋白质结构的结构约束。当与(1)H-(1)H 距离约束一起添加时,它们被证明可以将结构的精度提高两倍。通过对顺磁分子的弛豫率进行高斯轴向波动(GAF)分析,获得了特定位置的有序参数和运动时间尺度,并与骨架结构和金属结合进行了解释。运动时间尺度被发现处于溶液中总相关时间的范围内,在此范围内,这里所描述的内部运动将不可观察。

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