伯氏疏螺旋体的全基因组序列。
Complete genome sequence of Borrelia crocidurae.
机构信息
Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE), UMR CNRS 6236 IRD 198, IFR48, Faculté de Médecine, Méditerranée Infection, Aix-Marseille-Université, Marseille, France.
出版信息
J Bacteriol. 2012 Jul;194(14):3723-4. doi: 10.1128/JB.00118-12.
Abstract
We announce the draft genome sequence of Borrelia crocidurae (strain Achema). The 1,557,560-bp genome (27% GC content) comprises one 919,477-bp linear chromosome and 638,083-bp plasmids that together carry 1,472 open reading frames, 32 tRNAs, and three complete rRNAs, with almost complete colinearity between B. crocidurae and Borrelia duttonii chromosomes.
摘要
我们宣布库氏包柔螺旋体（Achema 株）的基因组草案序列。该 1,557,560-bp 基因组（GC 含量 27%）包含一条 919,477-bp 的线性染色体和 638,083-bp 的质粒，共携带 1,472 个开放阅读框、32 个 tRNA 和 3 个完整的 rRNA，库氏包柔螺旋体和杜氏包柔螺旋体的染色体几乎完全呈线性。
相似文献
1
Complete genome sequence of Borrelia crocidurae.伯氏疏螺旋体的全基因组序列。
J Bacteriol. 2012 Jul;194(14):3723-4. doi: 10.1128/JB.00118-12.
2
The epidemiology and geographic distribution of relapsing fever borreliosis in West and North Africa, with a review of the Ornithodoros erraticus complex (Acari: Ixodida).西、北非回归热螺旋体病的流行病学和地理分布，评伊蚊复合体（蛛形纲：硬蜱目）。
PLoS One. 2013 Nov 4;8(11):e78473. doi: 10.1371/journal.pone.0078473. eCollection 2013.
3
Absence of transovarial transmission of Borrelia duttonii, a tick-borne relapsing fever agent, by the vector tick Ornithodoros moubata.蜱传回归热病原体达顿疏螺旋体（Borrelia duttonii）不会通过媒介蜱莫氏钝缘蜱（Ornithodoros moubata）进行经卵传播。
Vector Borne Zoonotic Dis. 2008 Oct;8(5):607-13. doi: 10.1089/vbz.2007.0279.
4
Phylogenetic analysis of the spirochete Borrelia microti, a potential agent of relapsing fever in Iran.伊朗回归热潜在病原体螺旋体伯氏疏螺旋体的系统发育分析。
J Clin Microbiol. 2012 Sep;50(9):2873-6. doi: 10.1128/JCM.00801-12. Epub 2012 Jun 20.
5
Ornithodoros savignyi, the Tick Vector of "Candidatus Borrelia kalaharica" in Nigeria.尼日利亚“卡里哈尔拟伯氏疏螺旋体”的传播媒介钝眼硬蜱。
J Clin Microbiol. 2018 Aug 27;56(9). doi: 10.1128/JCM.00532-18. Print 2018 Sep.
6
Endemic foci of the tick-borne relapsing fever spirochete Borrelia crocidurae in Mali, West Africa, and the potential for human infection.西非马里蜱传回归热螺旋体伯氏疏螺旋体地方性疫源地及人类感染的可能性。
PLoS Negl Trop Dis. 2012;6(11):e1924. doi: 10.1371/journal.pntd.0001924. Epub 2012 Nov 29.
7
Does tick-borne relapsing fever have an animal reservoir in East Africa?蜱传回归热在东非有动物宿主吗？
Vector Borne Zoonotic Dis. 2007 Winter;7(4):659-66. doi: 10.1089/vbz.2007.0151.
8
MALDI-TOF mass spectrometry detection of pathogens in vectors: the Borrelia crocidurae/Ornithodoros sonrai paradigm.基质辅助激光解吸电离飞行时间质谱法检测媒介中的病原体：伯氏疏螺旋体/桑氏钝缘蜱范例
PLoS Negl Trop Dis. 2014 Jul 24;8(7):e2984. doi: 10.1371/journal.pntd.0002984. eCollection 2014 Jul.
9
Vector Competence of Geographical Populations of Ornithodoros turicata for the Tick-Borne Relapsing Fever Spirochete Borrelia turicatae.地理种群的钝缘蜱对蜱传回归热螺旋体土耳其包柔螺旋体的媒介效能。
Appl Environ Microbiol. 2018 Oct 17;84(21). doi: 10.1128/AEM.01505-18. Print 2018 Nov 1.
10
Ubiquitous bacteria Borrelia crocidurae in Western African ticks Ornithodoros sonrai.西非蜱类桑氏钝缘蜱中普遍存在的细菌——克氏疏螺旋体。
Parasit Vectors. 2015 Sep 17;8:477. doi: 10.1186/s13071-015-1089-6.
引用本文的文献
1
sp. nov.: Relapsing Fever Spirochetes Transmitted By the Tick Designated Previously as Genomic Group II.sp. nov.：先前被指定为基因组 II 组的通过蜱传播的回归热螺旋体。
Vector Borne Zoonotic Dis. 2024 May;24(5):278-284. doi: 10.1089/vbz.2023.0090. Epub 2024 Jan 22.
2
Genetic Manipulation of .对. 的遗传操作。
Curr Issues Mol Biol. 2021;42:307-332. doi: 10.21775/cimb.042.307. Epub 2020 Dec 10.
3
The impact of in vitro cultivation on the natural life cycle of the tick-borne relapsing fever spirochete Borrelia turicatae.体外培养对蜱传回归热螺旋体 Borrelia turicatae 自然生命周期的影响。
PLoS One. 2020 Oct 12;15(10):e0239089. doi: 10.1371/journal.pone.0239089. eCollection 2020.
4
Genomic blueprint of a relapsing fever pathogen in 15th century Scandinavia.15 世纪斯堪的纳维亚地区复发性发热病原体的基因组蓝图。
Proc Natl Acad Sci U S A. 2018 Oct 9;115(41):10422-10427. doi: 10.1073/pnas.1807266115. Epub 2018 Sep 24.
5
First insights in the variability of Borrelia recurrentis genomes.回归热疏螺旋体基因组变异性的初步见解。
PLoS Negl Trop Dis. 2017 Sep 13;11(9):e0005865. doi: 10.1371/journal.pntd.0005865. eCollection 2017 Sep.
6
Transcriptional Profiling the 150 kb Linear Megaplasmid of Borrelia turicatae Suggests a Role in Vector Colonization and Initiating Mammalian Infection.对土耳其疏螺旋体150 kb线性大质粒进行转录谱分析表明其在媒介定殖和引发哺乳动物感染中起作用。
PLoS One. 2016 Feb 4;11(2):e0147707. doi: 10.1371/journal.pone.0147707. eCollection 2016.
7
Laboratory Diagnosis of Tick-Borne African Relapsing Fevers: Latest Developments.蜱传非洲回归热的实验室诊断：最新进展。
Front Public Health. 2015 Nov 11;3:254. doi: 10.3389/fpubh.2015.00254. eCollection 2015.
8
Genome Sequence of Borrelia crocidurae Strain 03-02, a Clinical Isolate from Senegal.来自塞内加尔的临床分离株——克氏疏螺旋体菌株03 - 02的基因组序列
Genome Announc. 2014 Nov 6;2(6):e01150-14. doi: 10.1128/genomeA.01150-14.
9
African relapsing Fever borreliae genomospecies revealed by comparative genomics.比较基因组学揭示的非洲回归热螺旋体基因组种。
Front Public Health. 2014 May 14;2:43. doi: 10.3389/fpubh.2014.00043. eCollection 2014.
10
BorreliaBase: a phylogeny-centered browser of Borrelia genomes.BorreliaBase：一个以系统发生为中心的博莱霉素基因组浏览器。
BMC Bioinformatics. 2014 Jul 3;15:233. doi: 10.1186/1471-2105-15-233.
本文引用的文献
1
Molecular identification of Borrelia crocidurae in a patient returning from Senegal.一名从塞内加尔回国患者中伯氏疏螺旋体的分子鉴定
BMJ Case Rep. 2009;2009. doi: 10.1136/bcr.06.2008.0298. Epub 2009 Feb 20.
2
Phylogenetic analysis of a virulent Borrelia species isolated from patients with relapsing fever.从复发型发热患者中分离出的一种毒力较强的伯氏疏螺旋体的系统发育分析。
J Clin Microbiol. 2010 Jul;48(7):2484-9. doi: 10.1128/JCM.00541-10. Epub 2010 May 12.
3
Prodigal: prokaryotic gene recognition and translation initiation site identification.普罗迪格：原核基因识别和翻译起始位点鉴定。
BMC Bioinformatics. 2010 Mar 8;11:119. doi: 10.1186/1471-2105-11-119.
4
New concepts for the old challenge of African relapsing fever borreliosis.应对非洲复发性发热性疏螺旋体病这一古老挑战的新观念。
Clin Microbiol Infect. 2009 May;15(5):400-6. doi: 10.1111/j.1469-0691.2009.02819.x.
5
The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degraded subset of tick-borne Borrelia duttonii.致死性虱传回归热病原体——回归热疏螺旋体的基因组，是蜱传达顿疏螺旋体基因组的一个退化子集。
PLoS Genet. 2008 Sep 12;4(9):e1000185. doi: 10.1371/journal.pgen.1000185.
6
E-CAI: a novel server to estimate an expected value of Codon Adaptation Index (eCAI).E-CAI：一种用于估计密码子适应指数期望值（eCAI）的新型服务器。
BMC Bioinformatics. 2008 Jan 29;9:65. doi: 10.1186/1471-2105-9-65.
7
Incidence of tick-borne relapsing fever in west Africa: longitudinal study.西非蜱传回归热的发病率：纵向研究
Lancet. 2006 Jul 1;368(9529):37-43. doi: 10.1016/S0140-6736(06)68968-X.
8
ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.ARAGORN，一个用于在核苷酸序列中检测tRNA基因和tmRNA基因的程序。
Nucleic Acids Res. 2004 Jan 2;32(1):11-6. doi: 10.1093/nar/gkh152. Print 2004.
9
CDD: a database of conserved domain alignments with links to domain three-dimensional structure.CDD：一个保守结构域比对数据库，带有与结构域三维结构的链接。
Nucleic Acids Res. 2002 Jan 1;30(1):281-3. doi: 10.1093/nar/30.1.281.
10
The COG database: a tool for genome-scale analysis of protein functions and evolution.COG数据库：一种用于蛋白质功能和进化的基因组规模分析的工具。
Nucleic Acids Res. 2000 Jan 1;28(1):33-6. doi: 10.1093/nar/28.1.33.
Zotero 插件