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Taking the next step: building an Arabidopsis information portal.
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An international bioinformatics infrastructure to underpin the Arabidopsis community.
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Arabidopsis bioinformatics resources: The current state, challenges, and priorities for the future.
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PRIMe Update: innovative content for plant metabolomics and integration of gene expression and metabolite accumulation.
Plant Cell Physiol. 2013 Feb;54(2):e5. doi: 10.1093/pcp/pcs184. Epub 2013 Jan 3.
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Araport: the Arabidopsis information portal.
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PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update.
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Arabidopsis reactome: a foundation knowledgebase for plant systems biology.
Plant Cell. 2008 Jun;20(6):1426-36. doi: 10.1105/tpc.108.057976. Epub 2008 Jun 30.
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MAKER-P: a tool kit for the rapid creation, management, and quality control of plant genome annotations.
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Arabidopsis research in 2030: Translating the computable plant.
Plant J. 2025 Mar;121(5):e70047. doi: 10.1111/tpj.70047.
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Toward a systems view on RNA-binding proteins and associated RNAs in plants: Guilt by association.
Plant Cell. 2023 May 29;35(6):1708-1726. doi: 10.1093/plcell/koac345.
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Araport Lives: An Updated Framework for Arabidopsis Bioinformatics.
Plant Cell. 2020 Sep;32(9):2683-2686. doi: 10.1105/tpc.20.00358. Epub 2020 Jul 22.
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Arabidopsis bioinformatics resources: The current state, challenges, and priorities for the future.
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Beyond Transcription: Fine-Tuning of Circadian Timekeeping by Post-Transcriptional Regulation.
Genes (Basel). 2018 Dec 10;9(12):616. doi: 10.3390/genes9120616.
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Eco-Metabolomics and Metabolic Modeling: Making the Leap From Model Systems in the Lab to Native Populations in the Field.
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ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology.
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Mobile small RNAs regulate genome-wide DNA methylation.
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本文引用的文献

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Reading the second code: mapping epigenomes to understand plant growth, development, and adaptation to the environment.
Plant Cell. 2012 Jun;24(6):2257-61. doi: 10.1105/tpc.112.100636. Epub 2012 Jun 29.
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The iPlant Collaborative: Cyberinfrastructure for Plant Biology.
Front Plant Sci. 2011 Jul 25;2:34. doi: 10.3389/fpls.2011.00034. eCollection 2011.
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Dissecting plant genomes with the PLAZA comparative genomics platform.
Plant Physiol. 2012 Feb;158(2):590-600. doi: 10.1104/pp.111.189514. Epub 2011 Dec 23.
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The IntAct molecular interaction database in 2012.
Nucleic Acids Res. 2012 Jan;40(Database issue):D841-6. doi: 10.1093/nar/gkr1088. Epub 2011 Nov 24.
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Phytozome: a comparative platform for green plant genomics.
Nucleic Acids Res. 2012 Jan;40(Database issue):D1178-86. doi: 10.1093/nar/gkr944. Epub 2011 Nov 22.
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Tabix: fast retrieval of sequence features from generic TAB-delimited files.
Bioinformatics. 2011 Mar 1;27(5):718-9. doi: 10.1093/bioinformatics/btq671. Epub 2011 Jan 5.
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Cytoscape 2.8: new features for data integration and network visualization.
Bioinformatics. 2011 Feb 1;27(3):431-2. doi: 10.1093/bioinformatics/btq675. Epub 2010 Dec 12.
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Gramene database in 2010: updates and extensions.
Nucleic Acids Res. 2011 Jan;39(Database issue):D1085-94. doi: 10.1093/nar/gkq1148. Epub 2010 Nov 13.

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