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具有未知误差分布的反卷积中误差幅度和带宽选择的影响。

The effects of error magnitude and bandwidth selection for deconvolution with unknown error distribution.

作者信息

Wang Xiao-Feng, Ye Deping

机构信息

Department of Quantitative Health Sciences/Biostatistics Section, Cleveland Clinic Foundation, Cleveland, OH 44195, USA.

出版信息

J Nonparametr Stat. 2012 Jan 1;24(1):153-167. doi: 10.1080/10485252.2011.647024. Epub 2012 Jan 30.

DOI:10.1080/10485252.2011.647024
PMID:22754269
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3383633/
Abstract

The error distribution is generally unknown in deconvolution problems with real applications. A separate independent experiment is thus often conducted to collect the additional noise data in those studies. In this paper, we study the nonparametric deconvolution estimation from a contaminated sample coupled with an additional noise sample. A ridge-based kernel deconvolution estimator is proposed and its asymptotic properties are investigated depending on the error magnitude. We then present a data-driven bandwidth selection algorithm with combining the bootstrap method and the idea of simulation extrapolation. The finite sample performance of the proposed methods and the effects of error magnitude are evaluated through simulation studies. A real data analysis for a gene Illumina BeadArray study is performed to illustrate the use of the proposed methods.

摘要

在实际应用的反卷积问题中,误差分布通常是未知的。因此,在这些研究中经常进行单独的独立实验来收集额外的噪声数据。在本文中,我们研究了来自受污染样本并结合额外噪声样本的非参数反卷积估计。提出了一种基于岭的核反卷积估计器,并根据误差大小研究了其渐近性质。然后,我们提出了一种结合自助法和模拟外推思想的数据驱动带宽选择算法。通过模拟研究评估了所提方法的有限样本性能以及误差大小的影响。对基因Illumina BeadArray研究进行了实际数据分析,以说明所提方法的应用。

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BMC Bioinformatics. 2012 Dec 11;13:329. doi: 10.1186/1471-2105-13-329.
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Testing for differentially-expressed microRNAs with errors-in-variables nonparametric regression.基于变量误差的非参数回归检验差异表达 microRNAs。
PLoS One. 2012;7(5):e37537. doi: 10.1371/journal.pone.0037537. Epub 2012 May 24.

本文引用的文献

1
Deconvolution Estimation in Measurement Error Models: The R Package decon.测量误差模型中的反卷积估计:R 包 decon
J Stat Softw. 2011 Mar 1;39(10).
2
Normalizing bead-based microRNA expression data: a measurement error model-based approach.基于测量误差模型的归一化基于珠的 microRNA 表达数据。
Bioinformatics. 2011 Jun 1;27(11):1506-12. doi: 10.1093/bioinformatics/btr180. Epub 2011 Apr 15.
3
On nonparametric comparison of images and regression surfaces.关于图像与回归曲面的非参数比较。
J Stat Plan Inference. 2010 Oct 1;140(10):2875-2884. doi: 10.1016/j.jspi.2010.03.011.
4
Estimating smooth distribution function in the presence of heteroscedastic measurement errors.在存在异方差测量误差的情况下估计平滑分布函数。
Comput Stat Data Anal. 2010 Jan 1;54(1):25-36. doi: 10.1016/j.csda.2009.08.012.
5
Statistical methods of background correction for Illumina BeadArray data.Illumina BeadArray数据背景校正的统计方法。
Bioinformatics. 2009 Mar 15;25(6):751-7. doi: 10.1093/bioinformatics/btp040. Epub 2009 Feb 4.
6
Microarray background correction: maximum likelihood estimation for the normal-exponential convolution.微阵列背景校正:正态-指数卷积的最大似然估计
Biostatistics. 2009 Apr;10(2):352-63. doi: 10.1093/biostatistics/kxn042. Epub 2008 Dec 8.
7
Statistical issues in the analysis of Illumina data.Illumina数据 分析中的统计学问题。
BMC Bioinformatics. 2008 Feb 6;9:85. doi: 10.1186/1471-2105-9-85.
8
Exploration, normalization, and summaries of high density oligonucleotide array probe level data.高密度寡核苷酸阵列探针水平数据的探索、标准化及汇总
Biostatistics. 2003 Apr;4(2):249-64. doi: 10.1093/biostatistics/4.2.249.