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本文引用的文献

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Life at the extreme: lessons from the genome.极端环境下的生命:来自基因组的启示。
Genome Biol. 2012;13(3):241. doi: 10.1186/gb-2012-13-3-241.
2
TsHKT1;2, a HKT1 homolog from the extremophile Arabidopsis relative Thellungiella salsuginea, shows K(+) specificity in the presence of NaCl.TsHKT1;2,一种来自极端环境适应植物拟南芥近缘种盐生匙羹藤的 HKT1 同源蛋白,在含有 NaCl 的条件下显示出对 K(+)的特异性。
Plant Physiol. 2012 Mar;158(3):1463-74. doi: 10.1104/pp.111.193110. Epub 2012 Jan 11.
3
The genome of the extremophile crucifer Thellungiella parvula.极端生境十字花科 Thellungiella parvula 的基因组。
Nat Genet. 2011 Aug 7;43(9):913-8. doi: 10.1038/ng.889.
4
Genome structures and halophyte-specific gene expression of the extremophile Thellungiella parvula in comparison with Thellungiella salsuginea (Thellungiella halophila) and Arabidopsis.在与 Thellungiella salsuginea(Thellungiella halophila)和拟南芥的比较中,研究了极端微生物 Thellungiella parvula 的基因组结构和盐生植物特异性基因表达。
Plant Physiol. 2010 Nov;154(3):1040-52. doi: 10.1104/pp.110.163923. Epub 2010 Sep 10.
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Systematic analysis of GT factor family of rice reveals a novel subfamily involved in stress responses.系统分析水稻 GT 因子家族揭示了一个参与应激反应的新亚家族。
Mol Genet Genomics. 2010 Feb;283(2):157-69. doi: 10.1007/s00438-009-0507-x. Epub 2009 Dec 29.
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Nature. 2010 Jan 21;463(7279):311-7. doi: 10.1038/nature08696. Epub 2009 Dec 13.
7
The impact of water deficiency on leaf cuticle lipids of Arabidopsis.水分亏缺对拟南芥叶片角质层脂质的影响。
Plant Physiol. 2009 Dec;151(4):1918-29. doi: 10.1104/pp.109.141911. Epub 2009 Oct 9.
8
Soybean Trihelix transcription factors GmGT-2A and GmGT-2B improve plant tolerance to abiotic stresses in transgenic Arabidopsis.大豆三螺旋转录因子 GmGT-2A 和 GmGT-2B 提高转基因拟南芥对非生物胁迫的耐受性。
PLoS One. 2009 Sep 4;4(9):e6898. doi: 10.1371/journal.pone.0006898.
9
Learning from evolution: Thellungiella generates new knowledge on essential and critical components of abiotic stress tolerance in plants.从进化中学习:盐芥为植物非生物胁迫耐受性的必需和关键成分带来新知识。
Mol Plant. 2009 Jan;2(1):3-12. doi: 10.1093/mp/ssn094.
10
ABySS: a parallel assembler for short read sequence data.ABySS:一种用于短读长序列数据的并行汇编器。
Genome Res. 2009 Jun;19(6):1117-23. doi: 10.1101/gr.089532.108. Epub 2009 Feb 27.

从盐芥基因组中洞察耐盐性。

Insights into salt tolerance from the genome of Thellungiella salsuginea.

机构信息

State Key Laboratory of Plant Genomics, National Center for Plant Gene Research (Beijing), Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.

出版信息

Proc Natl Acad Sci U S A. 2012 Jul 24;109(30):12219-24. doi: 10.1073/pnas.1209954109. Epub 2012 Jul 9.

DOI:10.1073/pnas.1209954109
PMID:22778405
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3409768/
Abstract

Thellungiella salsuginea, a close relative of Arabidopsis, represents an extremophile model for abiotic stress tolerance studies. We present the draft sequence of the T. salsuginea genome, assembled based on ~134-fold coverage to seven chromosomes with a coding capacity of at least 28,457 genes. This genome provides resources and evidence about the nature of defense mechanisms constituting the genetic basis underlying plant abiotic stress tolerance. Comparative genomics and experimental analyses identified genes related to cation transport, abscisic acid signaling, and wax production prominent in T. salsuginea as possible contributors to its success in stressful environments.

摘要

盐芥(Thellungiella salsuginea)是拟南芥的近亲,是一种用于研究非生物胁迫耐受性的极端环境模式生物。我们提供了盐芥基因组的草图序列,该序列基于至少 28457 个基因的 7 条染色体,组装后的测序深度约为 134 倍。该基因组为植物非生物胁迫耐受性的遗传基础中构成防御机制的本质提供了资源和证据。比较基因组学和实验分析鉴定了与阳离子转运、脱落酸信号转导和蜡质合成相关的基因,这些基因在盐芥中较为显著,可能是其在胁迫环境中成功的原因之一。