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一种用于癌症诊断的新型“反应组学”方法。

A novel "reactomics" approach for cancer diagnostics.

机构信息

Ilse Katz Institute for Nanoscale Science and Technology, Ben Gurion University of the Negev, Beer Sheva 84105, Israel.

出版信息

Sensors (Basel). 2012;12(5):5572-85. doi: 10.3390/s120505572. Epub 2012 May 2.

DOI:10.3390/s120505572
PMID:22778601
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3386700/
Abstract

Non-invasive detection and monitoring of lethal diseases, such as cancer, are considered as effective factors in treatment and survival. We describe a new disease diagnostic approach, denoted "reactomics", based upon reactions between blood sera and an array of vesicles comprising different lipids and polydiacetylene (PDA), a chromatic polymer. We show that reactions between sera and such a lipid/PDA vesicle array produce chromatic patterns which depend both upon the sera composition as well as the specific lipid constituents within the vesicles. The chromatic patterns were processed through machine-learning algorithms, and the bioinformatics analysis could distinguish both between cancer-bearing and healthy patients, respectively, as well between two types of cancers. Size-separation and enzymatic digestion experiments indicate that lipoproteins are the primary components in sera which react with the chromatic biomimetic vesicles. This colorimetric reactomics concept is highly generic, robust, and does not require a priori knowledge upon specific disease markers in sera. Therefore, it could be employed as complementary or alternative approach for disease diagnostics.

摘要

非侵入性检测和监测致命疾病,如癌症,被认为是治疗和生存的有效因素。我们描述了一种新的疾病诊断方法,称为“反应组学”,它基于血清与包含不同脂质和聚二乙炔(PDA)的囊泡阵列之间的反应,PDA 是一种显色聚合物。我们表明,血清与这种脂质/PDA 囊泡阵列之间的反应产生依赖于血清组成以及囊泡内特定脂质成分的显色图案。通过机器学习算法处理显色图案,生物信息学分析可以区分癌症患者和健康患者,以及两种类型的癌症。大小分离和酶消化实验表明,脂蛋白是与显色仿生囊泡反应的血清中的主要成分。这种比色反应组学概念具有高度通用性、稳健性,并且不需要血清中特定疾病标志物的先验知识。因此,它可以用作疾病诊断的补充或替代方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e307/3386700/9e9effda3e71/sensors-12-05572f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e307/3386700/ea4caf6ac79d/sensors-12-05572f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e307/3386700/53e03c05c0bb/sensors-12-05572f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e307/3386700/01121b474002/sensors-12-05572f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e307/3386700/9e9effda3e71/sensors-12-05572f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e307/3386700/ea4caf6ac79d/sensors-12-05572f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e307/3386700/53e03c05c0bb/sensors-12-05572f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e307/3386700/01121b474002/sensors-12-05572f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e307/3386700/9e9effda3e71/sensors-12-05572f4.jpg

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PLoS One. 2011 Jan 18;6(1):e14540. doi: 10.1371/journal.pone.0014540.
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Cancer biomarkers: can we turn recent failures into success?癌症生物标志物:我们能否将最近的失败转化为成功?
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Tumor markers: the potential of "omics" approach.
肿瘤标志物:“组学”方法的潜力。
Curr Mol Med. 2010 Mar;10(2):249-57. doi: 10.2174/156652410790963277.
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Lipoprotein interactions with chromatic membranes as a novel marker for oxidative stress-related diseases.脂蛋白与染色质膜的相互作用作为氧化应激相关疾病的一种新型标志物。
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Recent Results Cancer Res. 2009;181:55-9. doi: 10.1007/978-3-540-69297-3_6.
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