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脆直杆菌属新种,从虹鳟鱼(Oncorhynchus mykiss)中分离得到。

Chryseobacterium tructae sp. nov., isolated from rainbow trout (Oncorhynchus mykiss).

机构信息

Centro de Vigilancia Sanitaria Veterinaria (VISAVET), Universidad Complutense, 28040 Madrid, Spain.

出版信息

Syst Appl Microbiol. 2012 Jul;35(5):315-9. doi: 10.1016/j.syapm.2012.06.003. Epub 2012 Jul 12.

Abstract

Three pale-orange bacteria (strains 1083-08, 1084-08(T) and 1095B-08) were isolated from diseased rainbow trout. The isolates were Gram-staining-negative, catalase- and oxidase-positive, rod-shaped cells. Analyses of their 16S rRNA gene sequences confirmed their adscription to the genus Chryseobacterium. The three isolates shared 100% 16S rRNA gene sequence similarity and 98.5% similarity with Chryseobacterium indologenes CCUG 14556(T), being the closest phylogenetically related species. Genomic DNA-DNA hybridization similarity values between the three isolates were 94-100% and 2-39% between strain 1084-08(T) and the type strains of other related Chryseobacterium species, confirming that the isolates represent a novel species within the genus Chryseobacterium. The DNA G+C content of the species was 33.6-36.1mol%. The predominant respiratory quinone of strain 1084-08(T) was MK-6 and the major fatty acids were iso-C(15:0), iso-C(17:1)ω9c, iso-C(17:0) 3-OH and C(16:1)ω6c. The isolates were distinguished from related Chryseobacterium species by a number of phenotypic properties. Based on the phenotypic, genotypic and phylogenetic findings, it is proposed that the new isolates from rainbow trout be classified as a new species of the genus Chryseobacterium, with the name of Chryseobacterium tructae sp. nov. The type strain is 1084-08(T) (=CECT 7798(T)=CCUG 60111(T)).

摘要

从患病虹鳟鱼中分离到三株淡橙色细菌(菌株 1083-08、1084-08(T)和 1095B-08)。这些分离株革兰氏染色阴性,过氧化氢酶和氧化酶阳性,呈杆状细胞。16S rRNA 基因序列分析证实它们属于黄杆菌属。这三个分离株的 16S rRNA 基因序列相似度为 100%,与 Chryseobacterium indologenes CCUG 14556(T)相似度为 98.5%,是最接近的系统发育相关物种。三个分离株之间的基因组 DNA-DNA 杂交相似度值为 94-100%,而 1084-08(T)菌株与其他相关 Chryseobacterium 种的模式菌株之间的相似度为 2-39%,证实这些分离株代表黄杆菌属中的一个新种。该物种的 DNA G+C 含量为 33.6-36.1mol%。菌株 1084-08(T)的主要呼吸醌为 MK-6,主要脂肪酸为 iso-C(15:0)、iso-C(17:1)ω9c、iso-C(17:0) 3-OH 和 C(16:1)ω6c。这些分离株与相关黄杆菌属物种在许多表型特性上有所区别。基于表型、基因型和系统发育研究结果,建议将来自虹鳟鱼的新分离株分类为黄杆菌属的一个新种,命名为黄杆菌虹鳟亚种 nov. sp.。模式菌株为 1084-08(T)(=CECT 7798(T)=CCUG 60111(T))。

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