Department of Biotechnology and Biosciences, University of Milano-Bicocca, Piazza della Scienza 2, 20126 Milan, Italy.
Inorg Chem. 2012 Aug 6;51(15):8331-9. doi: 10.1021/ic300863d. Epub 2012 Jul 16.
DFT/BP86/TZVP and DFT/B3LYP/TZVP have been used to investigate systematically the reaction pathways associated with the H-transfer step, which is the rate-determining step of the reaction HCOO(-) ⇄ CO(2) + H(+) + 2e(-), as catalyzed by metalloenzyme formate dehydrogenase (FDH). Actually, the energetics associated with the transfer from formate to all H (proton or hydride) acceptors that are present within the FDH active site have been sampled. This study points to a viable intimate mechanism in which the metal center mediates H transfer from formate to the final acceptor, i.e. a selenocysteine residue. The Mo-based reaction pathway, consisting of a β-H elimination to metal with concerted decarboxylation, turned out to be favored over previously proposed routes in which proton transfer occurs directly from HCOO(-) to selenocysteine. The proposed reaction pathway is reminiscent of the key step of metal-based catalysis of the water-gas shift reaction.
DFT/BP86/TZVP 和 DFT/B3LYP/TZVP 已被用于系统地研究与 H 转移步骤相关的反应途径,该步骤是甲酸根(HCOO(-)) ⇄ 二氧化碳(CO2)+ H(+) + 2e(-) 反应的速率决定步骤,由金属酶甲酸脱氢酶(FDH)催化。实际上,已经对甲酸向 FDH 活性位点中存在的所有 H(质子或氢化物)受体转移的能量进行了采样。这项研究表明,在金属中心介导甲酸向最终受体(即硒代半胱氨酸残基)转移的可行的紧密机制。基于钼的反应途径,包括与协同脱羧作用的 β-H 消除到金属,被证明优于以前提出的直接从 HCOO(-)向硒代半胱氨酸发生质子转移的途径。所提出的反应途径让人想起水煤气变换反应中金属基催化的关键步骤。