Division of Clinical Neuroscience, Max Planck Institute of Experimental Medicine, Göttingen, Germany.
Transl Psychiatry. 2011 Oct 4;1(10):e45. doi: 10.1038/tp.2011.43.
Genotype-phenotype correlations of common monogenic diseases revealed that the degree of deviation of mutant genes from wild-type structure and function often predicts disease onset and severity. In complex disorders such as schizophrenia, the overall genetic risk is still often >50% but genotype-phenotype relationships are unclear. Recent genome-wide association studies (GWAS) replicated a risk for several single-nucleotide polymorphisms (SNPs) regarding the endpoint diagnosis of schizophrenia. The biological relevance of these SNPs, however, for phenotypes or severity of schizophrenia has remained obscure. We hypothesized that the GWAS 'top-10' should as single markers, but even more so upon their accumulation, display associations with lead features of schizophrenia, namely positive and negative symptoms, cognitive deficits and neurological signs (including catatonia), and/or with age of onset of the disease prodrome as developmental readout and predictor of disease severity. For testing this hypothesis, we took an approach complementary to GWAS, and performed a phenotype-based genetic association study (PGAS). We utilized the to our knowledge worldwide largest phenotypical database of schizophrenic patients (n>1000), the GRAS (Göttingen Research Association for Schizophrenia) Data Collection. We found that the 'top-10' GWAS-identified risk SNPs neither as single markers nor when explored in the sense of a cumulative genetic risk, have any predictive value for disease onset or severity in the schizophrenic patients, as demonstrated across all core symptoms. We conclude that GWAS does not extract disease genes of general significance in schizophrenia, but may yield, on a hypothesis-free basis, candidate genes relevant for defining disease subgroups.
常见单基因疾病的基因型-表型相关性表明,突变基因与野生型结构和功能的偏离程度往往可以预测疾病的发病和严重程度。在精神分裂症等复杂疾病中,总体遗传风险仍常常>50%,但基因型-表型关系尚不清楚。最近的全基因组关联研究(GWAS)复制了几个单核苷酸多态性(SNP)与精神分裂症终点诊断相关的风险。然而,这些 SNP 对于精神分裂症的表型或严重程度的生物学相关性仍然不清楚。我们假设,GWAS 的“十大”SNP 作为单一标记,甚至在它们积累时,应该与精神分裂症的主要特征(即阳性和阴性症状、认知缺陷和神经体征(包括紧张症))以及(或)与疾病前驱期的发病年龄有关,作为疾病严重程度的发育结果和预测指标。为了检验这一假设,我们采用了一种与 GWAS 互补的表型遗传关联研究(PGAS)方法。我们利用了我们所知道的全世界最大的精神分裂症患者表型数据库(n>1000),即格拉茨研究协会(Göttingen Research Association for Schizophrenia)数据收集。我们发现,GWAS 确定的“十大”风险 SNP 既没有作为单一标记,也没有在累积遗传风险的意义上进行探索,对于精神分裂症患者的疾病发病或严重程度没有任何预测价值,这在所有核心症状中都得到了证明。我们的结论是,GWAS 并没有提取出精神分裂症中具有普遍意义的疾病基因,但可能会在无假设的基础上,产生与定义疾病亚群相关的候选基因。