Laboratoire de Physique Théorique de la Matière Condensée, Université Pierre et Marie Curie - Paris 6, UMR 7600 LPTMC, 4, place Jussieu, case courrier 121, 75252 Paris cedex 05, France.
J Phys Chem A. 2012 Aug 23;116(33):8455-63. doi: 10.1021/jp305737e. Epub 2012 Aug 15.
The description of interactions between biochemical species and the elucidation of the corresponding chemical mechanisms encounter an increasing interest both for the comprehension of biological pathways at the molecular scale and for the rationalization of drug design. Relying on powerful experimental tools such as thermal microfluidics and fluorescence detection, we propose a methodology to determine the chemical mechanism of a reaction without fitting parameters. A mechanism consistent with the accessible knowledge is assumed, and the assumption is checked through an iterative protocol. The test is based on the frequency analysis of the response of a targeted reactive species to temperature modulation. We build specific functions of the frequency that are constant for the assumed mechanism and show that the graph of these functions can be drawn from appropriate data analysis. The method is general and can be applied to any complex mechanism. It is here illustrated in detail in the case of single relaxation time mechanisms.
生物化学物质之间的相互作用的描述和相应化学机制的阐明,无论对于在分子水平上理解生物途径,还是对于合理化药物设计,都引起了越来越多的关注。本文基于热微流控和荧光检测等强大的实验工具,提出了一种无需拟合参数即可确定反应化学机制的方法。我们假设一个与可获得知识一致的机制,并通过迭代协议检查该假设。该测试基于对目标反应性物质对温度调制的响应频率的分析。我们构建了与假设机制一致的频率的特定函数,并表明这些函数的图形可以从适当的数据分析中得出。该方法具有通用性,可以应用于任何复杂的机制。本文详细说明了单弛豫时间机制的情况。