Université Pierre et Marie Curie-Paris 6, Laboratoire de Physique Théorique de la Matière Condensée, UMR 7600 LPTMC, 4 place Jussieu, case courrier 121, 75252 Paris cedex 05, France.
J Chem Phys. 2013 Jun 28;138(24):244109. doi: 10.1063/1.4811288.
Increased focus on kinetic signatures in biology, coupled with the lack of simple tools for chemical dynamics characterization, lead us to develop an efficient method for mechanism identification. A small thermal modulation is used to reveal chemical dynamics, which makes the technique compatible with in cellulo imaging. Then, the detection of concentration oscillations in an appropriate frequency range followed by a judicious analytical treatment of the data is sufficient to determine the number of chemical characteristic times, the reaction mechanism, and the full set of associated rate constants and enthalpies of reaction. To illustrate the scope of the method, dimeric protein folding is chosen as a biologically relevant example of nonlinear mechanism with one or two characteristic times.
在生物学中越来越关注动力学特征,再加上缺乏化学动力学特征的简单工具,促使我们开发出一种有效的机制识别方法。我们使用微小的热调制来揭示化学动力学,这使得该技术与细胞内成像兼容。然后,检测适当频率范围内的浓度振荡,然后对数据进行明智的分析处理,就足以确定化学特征时间的数量、反应机制以及整套相关的速率常数和反应焓。为了说明该方法的范围,我们选择二聚体蛋白质折叠作为具有一个或两个特征时间的非线性机制的生物学相关示例。