肠膜明串珠菌 IE-3 菌株的基因组序列。
Genome sequence of Pediococcus pentosaceus strain IE-3.
机构信息
Institute of Microbial Technology, Council of Scientific and Industrial Research, Sector 39A, Chandigarh, India.
出版信息
J Bacteriol. 2012 Aug;194(16):4468. doi: 10.1128/JB.00897-12.
Abstract
We report the 1.8-Mb genome sequence of Pediococcus pentosaceus strain IE-3, isolated from a dairy effluent sample. The whole-genome sequence of this strain will aid in comparative genomics of Pediococcus pentosaceus strains of diverse ecological origins and their biotechnological applications.
摘要
我们报告了从乳制品废水样本中分离出的戊糖片球菌 IE-3 菌株的 1.8-Mb 基因组序列。该菌株的全基因组序列将有助于不同生态起源的戊糖片球菌菌株的比较基因组学研究及其生物技术应用。
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3
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