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本文引用的文献

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Experimental and analytical tools for studying the human microbiome.研究人类微生物组的实验和分析工具。
Nat Rev Genet. 2011 Dec 16;13(1):47-58. doi: 10.1038/nrg3129.
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Moving pictures of the human microbiome.人体微生物组的动态图像。
Genome Biol. 2011;12(5):R50. doi: 10.1186/gb-2011-12-5-r50.
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Colonoscopic fecal bacteriotherapy in the treatment of recurrent Clostridium difficile infection--results and follow-up.结肠镜下粪便细菌疗法治疗复发性艰难梭菌感染——结果与随访
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Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans.饮食驱动哺乳动物系统发育和人类肠道微生物功能趋同。
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Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.标记基因序列(MIMARKS)和任何(x)序列(MIxS)规范的最小信息。
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Development of the human gastrointestinal microbiota and insights from high-throughput sequencing.人类胃肠道微生物组的发育和高通量测序的启示。
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A large-scale benchmark study of existing algorithms for taxonomy-independent microbial community analysis.大规模基准研究现有的分类学独立微生物群落分析算法。
Brief Bioinform. 2012 Jan;13(1):107-21. doi: 10.1093/bib/bbr009. Epub 2011 Apr 27.
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Enterotypes of the human gut microbiome.人类肠道微生物组的肠型。
Nature. 2011 May 12;473(7346):174-80. doi: 10.1038/nature09944. Epub 2011 Apr 20.
9
The genomic standards consortium: bringing standards to life for microbial ecology.基因组标准协会:让微生物生态学标准落地生根。
ISME J. 2011 Oct;5(10):1565-7. doi: 10.1038/ismej.2011.39. Epub 2011 Apr 7.
10
Assessing and improving methods used in operational taxonomic unit-based approaches for 16S rRNA gene sequence analysis.评估和改进基于操作分类单元的 16S rRNA 基因序列分析方法。
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定义人类微生物组。

Defining the human microbiome.

机构信息

Department of Chemistry and Biochemistry, University of Colorado at Boulder, Boulder, Colorado 80309, USA.

出版信息

Nutr Rev. 2012 Aug;70 Suppl 1(Suppl 1):S38-44. doi: 10.1111/j.1753-4887.2012.00493.x.

DOI:10.1111/j.1753-4887.2012.00493.x
PMID:22861806
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3426293/
Abstract

Rapidly developing sequencing methods and analytical techniques are enhancing our ability to understand the human microbiome, and, indeed, how the microbiome and its constituents are defined. This review highlights recent research that expands our ability to understand the human microbiome on different spatial and temporal scales, including daily time series datasets spanning months. Furthermore, emerging concepts related to defining operational taxonomic units, diversity indices, core versus transient microbiomes, and the possibility of enterotypes are discussed. Additional advances in sequencing technology and in our understanding of the microbiome will provide exciting prospects for exploiting the microbiota for personalized medicine.

摘要

快速发展的测序方法和分析技术正在增强我们理解人类微生物组的能力,实际上也在增强我们定义微生物组及其组成部分的能力。这篇综述强调了最近的研究进展,这些进展扩展了我们在不同时空尺度上理解人类微生物组的能力,包括跨越数月的每日时间序列数据集。此外,还讨论了与定义操作分类单元、多样性指数、核心与瞬态微生物组以及存在肠型可能性相关的新兴概念。测序技术的进一步发展和我们对微生物组的理解将为利用微生物组进行个性化医学提供令人兴奋的前景。