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病毒传播:下一代测序技术在人类肠道噬菌体群体中的应用。

Going viral: next-generation sequencing applied to phage populations in the human gut.

机构信息

Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, Missouri 63108, USA.

出版信息

Nat Rev Microbiol. 2012 Sep;10(9):607-17. doi: 10.1038/nrmicro2853. Epub 2012 Aug 6.

DOI:10.1038/nrmicro2853
PMID:22864264
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3596094/
Abstract

Over the past decade, researchers have begun to characterize viral diversity using metagenomic methods. These studies have shown that viruses, the majority of which infect bacteria, are probably the most genetically diverse components of the biosphere. Here, we briefly review the incipient rise of a phage biology renaissance, which has been catalysed by advances in next-generation sequencing. We explore how work characterizing phage diversity and lifestyles in the human gut is changing our view of ourselves as supra-organisms. Finally, we discuss how a renewed appreciation of phage dynamics may yield new applications for phage therapies designed to manipulate the structure and functions of our gut microbiomes.

摘要

在过去的十年中,研究人员开始使用宏基因组学方法来描述病毒的多样性。这些研究表明,大多数感染细菌的病毒可能是生物圈中遗传多样性最高的组成部分。在这里,我们简要回顾一下由下一代测序技术推动的噬菌生物学复兴的初步兴起。我们探讨了描述人类肠道中噬菌体多样性和生活方式的工作如何改变我们对自己作为超级生物体的看法。最后,我们讨论了重新认识噬菌体动力学如何为旨在操纵我们肠道微生物组结构和功能的噬菌体疗法提供新的应用。

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Evolutionary ecology of microbial wars: within-host competition and (incidental) virulence.微生物战争的进化生态学:宿主体内的竞争与(附带的)毒力
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Reference-independent comparative metagenomics using cross-assembly: crAss.基于交叉组装的参考独立比较宏基因组学:crAss。
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A field guide to eukaryotic circular single-stranded DNA viruses: insights gained from metagenomics.
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Human Gut Bacteriophageome: Insights Into Drug Resistance Mechanisms in Tuberculosis.人类肠道噬菌体组:对结核病耐药机制的见解
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Bacteriophage-driven DNA inversions shape bacterial functionality and long-term co-existence in .噬菌体驱动的DNA倒位塑造了细菌的功能以及在……中的长期共存。
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Evaluation of Enrichment Approaches for the Study of the Viromes in Mollusk Species.软体动物物种病毒组研究中富集方法的评估
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Ethical bioprospecting and microbial assessments for sustainable solutions to the AMR crisis.用于抗微生物药物耐药性危机可持续解决方案的伦理生物勘探和微生物评估。
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A nested case-control study on the association of gut virome in early pregnancy and gestational diabetes mellitus.一项关于孕早期肠道病毒组与妊娠期糖尿病关联的巢式病例对照研究。
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Microbiome. 2024 Oct 24;12(1):219. doi: 10.1186/s40168-024-01935-5.
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