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白喉棒状杆菌中间亚种 NCTC 5011 基因组草图

Draft genome sequence of Corynebacterium diphtheriae biovar intermedius NCTC 5011.

机构信息

Strathclyde Institute of Pharmacy and Biomedical Science, University of Strathclyde, Glasgow, United Kingdom.

出版信息

J Bacteriol. 2012 Sep;194(17):4738. doi: 10.1128/JB.00939-12.

DOI:10.1128/JB.00939-12
PMID:22887653
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3415510/
Abstract

We report an annotated draft genome of the human pathogen Corynebacterium diphtheriae bv. intermedius NCTC 5011. This strain is the first C. diphtheriae bv. intermedius strain to be sequenced, and our results provide a useful comparison to the other primary disease-causing biovars, C. diphtheriae bv. gravis and C. diphtheriae bv. mitis. The sequence has been deposited at DDBJ/EMBL/GenBank with the accession number AJVH01000000.

摘要

我们报道了人类病原体中间型白喉棒状杆菌 NCTC 5011 的注释草案基因组。该菌株是第一个被测序的中间型白喉棒状杆菌菌株,我们的结果与其他主要致病生物型,即重型白喉棒状杆菌和中间型白喉棒状杆菌,进行了有益的比较。该序列已在 DDBJ/EMBL/GenBank 中以 AJVH01000000 的 accession number 进行了提交。

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本文引用的文献

1
The draft genome sequence of Corynebacterium diphtheriae bv. mitis NCTC 3529 reveals significant diversity between the primary disease-causing biovars.白喉棒状杆菌温和亚种 NCTC 3529 的基因组草案序列揭示了主要致病生物型之间的显著多样性。
J Bacteriol. 2012 Jun;194(12):3269. doi: 10.1128/JB.00503-12.
2
Pangenomic study of Corynebacterium diphtheriae that provides insights into the genomic diversity of pathogenic isolates from cases of classical diphtheria, endocarditis, and pneumonia.对白喉棒状杆菌的泛基因组研究提供了对经典白喉、心内膜炎和肺炎病例中致病性分离株基因组多样性的深入了解。
J Bacteriol. 2012 Jun;194(12):3199-215. doi: 10.1128/JB.00183-12. Epub 2012 Apr 13.
3
mGenomeSubtractor: a web-based tool for parallel in silico subtractive hybridization analysis of multiple bacterial genomes.mGenomeSubtractor:一个基于网络的工具,用于对多个细菌基因组进行并行的计算机模拟消减杂交分析。
Nucleic Acids Res. 2010 Jul;38(Web Server issue):W194-200. doi: 10.1093/nar/gkq326. Epub 2010 Apr 30.
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xBASE, a collection of online databases for bacterial comparative genomics.xBASE,一个用于细菌比较基因组学的在线数据库集合。
Nucleic Acids Res. 2006 Jan 1;34(Database issue):D335-7. doi: 10.1093/nar/gkj140.
5
Mauve: multiple alignment of conserved genomic sequence with rearrangements.Mauve:带重排的保守基因组序列多重比对。
Genome Res. 2004 Jul;14(7):1394-403. doi: 10.1101/gr.2289704.
6
The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129.白喉棒状杆菌NCTC13129的全基因组序列及分析
Nucleic Acids Res. 2003 Nov 15;31(22):6516-23. doi: 10.1093/nar/gkg874.
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Current approaches to the laboratory diagnosis of diphtheria.白喉实验室诊断的当前方法。
J Infect Dis. 2000 Feb;181 Suppl 1:S138-45. doi: 10.1086/315552.
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Laboratory review of reference strains of Corynebacterium diphtheriae indicates mistyped intermedius strains.对白喉棒状杆菌参考菌株的实验室检查表明存在中间型菌株分型错误的情况。
J Clin Microbiol. 1993 Nov;31(11):3060-2. doi: 10.1128/jcm.31.11.3060-3062.1993.