Department of Biological Sciences, Hockmeyer Hall of Structural Biology, Purdue University, West Lafayette, IN 47907, USA.
Phys Chem Chem Phys. 2012 Oct 28;14(40):13853-60. doi: 10.1039/c2cp41386h. Epub 2012 Aug 14.
Considering information in the crystal structures of the cytochrome b(6)f complex relevant to the rate-limiting step in oxygenic photosynthesis, it is enigmatic that electron transport in the complex is not limited by the large distance, approximately 26 Å, between the iron-sulfur cluster (ISP) and its electron acceptor, cytochrome f. This enigma has been explained for the respiratory bc(1) complex by a crystal structure with a greatly shortened cluster-heme c(1) distance, leading to a concept of ISP dynamics in which the ISP soluble domain undergoes a translation-rotation conformation change and oscillates between positions relatively close to the cyt c(1) heme and a membrane-proximal position close to the ubiquinol electron-proton donor. Comparison of cytochrome b(6)f structures shows a variation in cytochrome f heme position that suggests the possibility of flexibility and motion of the extended cytochrome f structure that could entail a transient decrease in cluster-heme f distance. The dependence of cyt f turnover on lumen viscosity is consistent with a role of ISP - cyt f dynamics in determination of the rate-limiting step under conditions of low light intensity. Under conditions of low light intensity and proton electrochemical gradient present, for example, under a leaf canopy, it is proposed that a rate limitation of electron transport in the b(6)f complex may also arise from steric constraints in the entry/exit portal for passage of the plastoquinol and -quinone to/from its oxidation site proximal to the iron-sulfur cluster.
考虑到与氧合光合作用限速步骤相关的细胞色素 b(6)f 复合物晶体结构中的信息,令人费解的是,复合物中的电子传递不受铁硫簇 (ISP) 和其电子受体细胞色素 f 之间约 26 Å 的大距离限制。这种谜团已经通过呼吸 bc(1) 复合物的晶体结构得到了解释,该晶体结构中的簇血红素 c(1) 距离大大缩短,导致 ISP 动力学的概念,其中 ISP 可溶性结构域经历翻译-旋转构象变化,并在相对靠近 cyt c(1) 血红素的位置和靠近 ubiquinol 电子质子供体的膜近端位置之间振荡。细胞色素 b(6)f 结构的比较表明细胞色素 f 血红素位置的变化表明扩展细胞色素 f 结构的灵活性和运动的可能性,这可能导致簇血红素 f 距离的瞬时降低。细胞色素 f 周转率对腔粘度的依赖性与 ISP - cyt f 动力学在低光强条件下确定限速步骤的作用一致。例如,在低光强和质子电化学梯度存在的条件下,例如在叶冠下,据推测,b(6)f 复合物中电子传递的速率限制也可能来自通过进入/退出门户的质体醌和 - 醌向/从其靠近铁硫簇的氧化部位的传递的空间限制。