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本文引用的文献

1
Bacterial Swarming: A Model System for Studying Dynamic Self-assembly.细菌群体游动:一种用于研究动态自组装的模型系统。
Soft Matter. 2009;5(6):1174-1187. doi: 10.1039/B812146J.
2
Scale-invariant correlations in dynamic bacterial clusters.动态细菌簇中的标度不变相关性。
Phys Rev Lett. 2012 Apr 6;108(14):148101. doi: 10.1103/PhysRevLett.108.148101. Epub 2012 Apr 5.
3
Dynamics of confined suspensions of swimming particles.受限游动粒子悬浮液的动力学
J Phys Condens Matter. 2009 May 20;21(20):204107. doi: 10.1088/0953-8984/21/20/204107. Epub 2009 Apr 21.
4
Energy transport in a concentrated suspension of bacteria.细菌浓悬液中的能量传递。
Phys Rev Lett. 2011 Jul 8;107(2):028102. doi: 10.1103/PhysRevLett.107.028102. Epub 2011 Jul 7.
5
Dynamics of swimming bacteria: transition to directional order at high concentration.游动细菌的动力学:在高浓度下向定向有序转变
Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Jun;83(6 Pt 1):061907. doi: 10.1103/PhysRevE.83.061907. Epub 2011 Jun 14.
6
Inferring the structure and dynamics of interactions in schooling fish.推断成群游动鱼类的相互作用的结构和动态。
Proc Natl Acad Sci U S A. 2011 Nov 15;108(46):18720-5. doi: 10.1073/pnas.1107583108. Epub 2011 Jul 27.
7
Viscosity of bacterial suspensions: hydrodynamic interactions and self-induced noise.细菌悬浮液的粘度:流体动力学相互作用与自激噪声。
Phys Rev E Stat Nonlin Soft Matter Phys. 2011 May;83(5 Pt 1):050904. doi: 10.1103/PhysRevE.83.050904. Epub 2011 May 16.
8
Fluid dynamics and noise in bacterial cell-cell and cell-surface scattering.细菌细胞间和细胞表面散射中的流体力和噪声。
Proc Natl Acad Sci U S A. 2011 Jul 5;108(27):10940-5. doi: 10.1073/pnas.1019079108. Epub 2011 Jun 20.
9
Enhancement of biomixing by swimming algal cells in two-dimensional films.二维膜中游泳藻类细胞的生物混合增强。
Proc Natl Acad Sci U S A. 2011 Jun 28;108(26):10391-5. doi: 10.1073/pnas.1107046108. Epub 2011 Jun 9.
10
Lévy fluctuations and mixing in dilute suspensions of algae and bacteria.藻类和细菌稀悬液中的 Lévy 波动和混合。
J R Soc Interface. 2011 Sep 7;8(62):1314-31. doi: 10.1098/rsif.2010.0545. Epub 2011 Feb 23.

活体流体中的中尺度湍流。

Meso-scale turbulence in living fluids.

机构信息

Institute for Theoretical Physics II: Soft Matter, Heinrich-Heine-Universität Düsseldorf, Universitätsstraße 1, D-40225 Düsseldorf, Germany.

出版信息

Proc Natl Acad Sci U S A. 2012 Sep 4;109(36):14308-13. doi: 10.1073/pnas.1202032109. Epub 2012 Aug 20.

DOI:10.1073/pnas.1202032109
PMID:22908244
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3437854/
Abstract

Turbulence is ubiquitous, from oceanic currents to small-scale biological and quantum systems. Self-sustained turbulent motion in microbial suspensions presents an intriguing example of collective dynamical behavior among the simplest forms of life and is important for fluid mixing and molecular transport on the microscale. The mathematical characterization of turbulence phenomena in active nonequilibrium fluids proves even more difficult than for conventional liquids or gases. It is not known which features of turbulent phases in living matter are universal or system-specific or which generalizations of the Navier-Stokes equations are able to describe them adequately. Here, we combine experiments, particle simulations, and continuum theory to identify the statistical properties of self-sustained meso-scale turbulence in active systems. To study how dimensionality and boundary conditions affect collective bacterial dynamics, we measured energy spectra and structure functions in dense Bacillus subtilis suspensions in quasi-2D and 3D geometries. Our experimental results for the bacterial flow statistics agree well with predictions from a minimal model for self-propelled rods, suggesting that at high concentrations the collective motion of the bacteria is dominated by short-range interactions. To provide a basis for future theoretical studies, we propose a minimal continuum model for incompressible bacterial flow. A detailed numerical analysis of the 2D case shows that this theory can reproduce many of the experimentally observed features of self-sustained active turbulence.

摘要

湍流无处不在,从海洋洋流到小规模的生物和量子系统。微生物悬浮液中的自持续湍流运动为最简单形式的生命之间的集体动力行为提供了一个有趣的例子,并且对于微尺度上的流体混合和分子输运很重要。在非平衡活性流体中对湍流现象的数学描述甚至比传统液体或气体更具挑战性。目前尚不清楚生命物质中湍流相的哪些特征是普遍的或特定于系统的,或者纳维-斯托克斯方程的哪些推广能够充分描述它们。在这里,我们结合实验、粒子模拟和连续体理论来确定活性系统中自持续介观湍流的统计特性。为了研究维度和边界条件如何影响集体细菌动力学,我们在拟二维和三维几何结构中测量了密集枯草芽孢杆菌悬浮液中的能量谱和结构函数。我们对细菌流动统计数据的实验结果与自推进棒的最小模型的预测非常吻合,这表明在高浓度下,细菌的集体运动主要由短程相互作用主导。为了为未来的理论研究提供基础,我们提出了不可压缩细菌流动的最小连续体模型。对二维情况的详细数值分析表明,该理论可以再现自持续主动湍流中许多实验观察到的特征。