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多物种细菌生物对流中的动态诱导空间分离

Dynamically induced spatial segregation in multispecies bacterial bioconvection.

作者信息

Gallardo-Navarro Oscar, Arbel-Goren Rinat, August Elias, Olmedo-Alvarez Gabriela, Stavans Joel

机构信息

Department of Physics of Complex Systems, Weizmann Institute of Science, Rehovot, Israel.

Department of Engineering, Reykjavik University, Reykjavik, Iceland.

出版信息

Nat Commun. 2025 Jan 22;16(1):950. doi: 10.1038/s41467-025-56244-8.

DOI:10.1038/s41467-025-56244-8
PMID:39843893
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11754595/
Abstract

Active matter, from motile bacteria to animals, can exhibit striking collective and coherent behavior. Despite significant advances in understanding the behavior of homogeneous systems, little is known about the self-organization and dynamics of heterogeneous active matter, such as complex and diverse bacterial communities. Under oxygen gradients, many bacterial species swim towards air-liquid interfaces in auto-organized, directional bioconvective flows, whose spatial scales exceed the cell size by orders of magnitude. Here we show that multispecies bacterial suspensions undergoing oxytactic-driven bioconvection exhibit dynamically driven spatial segregation, despite the enhanced mixing of bioconvective flows, and the fact that these species coexist in their natural habitat. Segregation is observed as patterns of spatially interlocked domains, with local dominance of one of the constituent species in the suspension. Our findings suggest that segregation mechanisms are driven by species-specific motile behaviors under conditions of hydrodynamic flow, rather than biochemical repulsion. Thus, species with different motile characteristics in the same ecological context can enhance their access to limiting resources. This work provides novel insights on the role of heterogeneity in active matter, as well as on the dynamics of complex microbial communities, their spatial organization and their collective behavior.

摘要

从游动细菌到动物,活性物质都能展现出引人注目的集体和连贯行为。尽管在理解均匀系统行为方面取得了重大进展,但对于异质活性物质(如复杂多样的细菌群落)的自组织和动力学却知之甚少。在氧气梯度下,许多细菌物种会以自组织的定向生物对流形式游向气液界面,其空间尺度比细胞大小超出几个数量级。在此我们表明,经历趋氧驱动生物对流的多物种细菌悬浮液,尽管生物对流增强了混合,且这些物种在其自然栖息地中共存,但仍表现出动态驱动的空间分离。分离表现为空间上相互锁定的区域模式,悬浮液中一种组成物种在局部占主导地位。我们的研究结果表明,分离机制是由流体动力流下物种特异性的运动行为驱动的,而非生化排斥。因此,在相同生态环境中具有不同运动特征的物种可以增加它们获取有限资源的机会。这项工作为异质性在活性物质中的作用,以及复杂微生物群落的动力学、其空间组织和集体行为提供了新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81dc/11754595/e5782cf6e752/41467_2025_56244_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81dc/11754595/0e57ca0875ab/41467_2025_56244_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81dc/11754595/9cfc4240e9c4/41467_2025_56244_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81dc/11754595/2714094ce06b/41467_2025_56244_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81dc/11754595/29da4bd24f5d/41467_2025_56244_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81dc/11754595/28b2bb72e967/41467_2025_56244_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81dc/11754595/e5782cf6e752/41467_2025_56244_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81dc/11754595/0e57ca0875ab/41467_2025_56244_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81dc/11754595/9cfc4240e9c4/41467_2025_56244_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81dc/11754595/2714094ce06b/41467_2025_56244_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81dc/11754595/29da4bd24f5d/41467_2025_56244_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81dc/11754595/28b2bb72e967/41467_2025_56244_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81dc/11754595/e5782cf6e752/41467_2025_56244_Fig6_HTML.jpg

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本文引用的文献

1
Motile bacteria leverage bioconvection for eco-physiological benefits in a natural aquatic environment.在自然水生环境中,运动性细菌利用生物对流来获取生态生理益处。
Front Microbiol. 2023 Dec 13;14:1253009. doi: 10.3389/fmicb.2023.1253009. eCollection 2023.
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Metabolic exchanges are ubiquitous in natural microbial communities.代谢交换在自然微生物群落中无处不在。
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Bacterial bioconvection confers context-dependent growth benefits and is robust under varying metabolic and genetic conditions.
细菌生物对流赋予了与环境相关的生长优势,并且在不同的代谢和遗传条件下具有很强的稳健性。
J Bacteriol. 2023 Oct 26;205(10):e0023223. doi: 10.1128/jb.00232-23. Epub 2023 Oct 3.
4
A three-species synthetic community model whose rapid response to antagonism allows the study of higher-order dynamics and emergent properties in minutes.一种三物种合成群落模型,其对拮抗作用的快速反应使得能够在数分钟内研究高阶动力学和涌现特性。
Front Microbiol. 2023 Jun 2;14:1057883. doi: 10.3389/fmicb.2023.1057883. eCollection 2023.
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Lane nucleation in complex active flows.复杂活性流中的通道成核。
Science. 2023 Mar 3;379(6635):923-928. doi: 10.1126/science.add8091. Epub 2023 Mar 2.
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Physical characteristics of mixed-species swarming colonies.混合物种群体的物理特性。
Phys Rev E. 2022 Jun;105(6-1):064404. doi: 10.1103/PhysRevE.105.064404.
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Bacterial active matter.细菌活性物质。
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More than propellers: how flagella shape bacterial motility behaviors.不只是螺旋桨:鞭毛如何塑造细菌的运动行为。
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