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1
The Cuatro Ciénegas Basin in Coahuila, Mexico: an astrobiological Precambrian Park.墨西哥科阿韦拉州的四色湖盆地:一个前寒武纪的天体生物学公园。
Astrobiology. 2012 Jul;12(7):641-7. doi: 10.1089/ast.2011.0675.
2
Testing the impact of calibration on molecular divergence times using a fossil-rich group: the case of Nothofagus (Fagales).利用化石丰富的类群检验校准对分子分歧时间的影响:以山毛榉属(壳斗科)为例。
Syst Biol. 2012 Mar;61(2):289-313. doi: 10.1093/sysbio/syr116. Epub 2011 Dec 26.
3
Parallel Evolution and Horizontal Gene Transfer of the pst Operon in Firmicutes from Oligotrophic Environments.寡营养环境中厚壁菌门pst操纵子的平行进化与水平基因转移
Int J Evol Biol. 2011 Mar 3;2011:781642. doi: 10.4061/2011/781642.
4
Resolving difficult phylogenetic questions: why more sequences are not enough.解决复杂的系统发育问题:为何更多序列并不足够。
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5
Phylogenetic and molecular clock inferences of cyanobacterial strains within Rivulariaceae from distant environments.远环境下的 Rivulariaceae 蓝细菌菌株的系统发育和分子钟推断。
FEMS Microbiol Lett. 2011 Mar;316(2):90-9. doi: 10.1111/j.1574-6968.2010.02195.x. Epub 2011 Jan 20.
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Diversity of culturable thermo-resistant aquatic bacteria along an environmental gradient in Cuatro Ciénegas, Coahuila, México.墨西哥科阿韦拉州四色湖沿环境梯度可培养耐热水生细菌的多样性。
Antonie Van Leeuwenhoek. 2011 Feb;99(2):303-18. doi: 10.1007/s10482-010-9490-9. Epub 2010 Aug 15.
7
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8
Understanding the evolutionary relationships and major traits of Bacillus through comparative genomics.通过比较基因组学了解芽孢杆菌的进化关系和主要特征。
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9
Global biogeochemical changes at both ends of the proterozoic: insights from phosphorites.元古代两端的全球生物地球化学变化:磷块岩的启示。
Astrobiology. 2010 Mar;10(2):165-81. doi: 10.1089/ast.2009.0360.
10
Pseudomonas cuatrocienegasensis sp. nov., isolated from an evaporating lagoon in the Cuatro Cienegas valley in Coahuila, Mexico.新种墨西哥科阿韦拉州夸特罗谢内加斯谷蒸发泻湖分离出的夸特罗谢内加斯假单胞菌。
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墨西哥四色湖盆厚壁菌门的分歧与系统发育:古老海洋的一扇窗。

Divergence and phylogeny of Firmicutes from the Cuatro Ciénegas Basin, Mexico: a window to an ancient ocean.

机构信息

Departamento de Ecología Evolutiva, Instituto de Ecología, Universidad Nacional Autónoma de México, Coyoacán, México D.F., México.

出版信息

Astrobiology. 2012 Jul;12(7):674-84. doi: 10.1089/ast.2011.0685.

DOI:10.1089/ast.2011.0685
PMID:22920517
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3426897/
Abstract

The Cuatro Ciénegas Basin (CCB) has been identified as a center of endemism for many life-forms. Nearly half the bacterial species found in the spring systems have their closest relatives in the ocean. This raises the question of whether the high diversity observed today is the product of an adaptive radiation similar to that of the Galapagos Islands or whether the bacterial groups are "survivors" of an ancient sea, which would be of interest for astrobiology. To help answer this question, we focused on Firmicutes from Cuatro Ciénegas (mainly Bacillus and Exiguobacterium). We reconstructed the phylogenetic relationships of Firmicutes with 28 housekeeping genes and dated the resulting tree using geological events as calibration points. Our results show that marine Bacillus diverged from other Bacillus strains 838 Ma, while Bacillus from Cuatro Ciénegas have divergence dates that range from 770 to 202 Ma. The members of Exiguobacterium from the CCB conform to a much younger group that diverged from the Andes strain 60 Ma and from the one in Yellowstone 183 Ma. Therefore, the diversity of Firmicutes in Cuatro Ciénegas is not the product of a recent radiation but the product of the isolation of lineages from an ancient ocean. Hence, Cuatro Ciénegas is not a Galapagos Archipelago for bacteria but is more like an astrobiological "time machine" in which bacterial lineages survived in an oligotrophic environment that may be very similar to that of the Precambrian. Key Words: Firmicutes-Cuatro Ciénegas-Precambrian-Molecular dating-Western Interior Seaway.

摘要

四泉谷盆地(CCB)已被确定为许多生命形式的特有中心。在泉系统中发现的近一半细菌物种与海洋中的亲缘关系最近。这就提出了一个问题,即今天观察到的高多样性是类似于加拉帕戈斯群岛的适应性辐射的产物,还是细菌群体是古老海洋的“幸存者”,这对天体生物学有意义。为了帮助回答这个问题,我们专注于来自四泉谷的厚壁菌门(主要是芽孢杆菌和极端杆菌)。我们用 28 个看家基因重建了厚壁菌门的系统发育关系,并使用地质事件作为校准点来对生成的树进行时间测定。我们的结果表明,海洋芽孢杆菌与其他芽孢杆菌菌株在 838 Ma 时就已经分化,而来自四泉谷的芽孢杆菌的分化日期则从 770 Ma 到 202 Ma 不等。CCB 的极端杆菌成员属于一个年轻得多的群体,它与安第斯菌株在 60 Ma 分化,与黄石菌株在 183 Ma 分化。因此,四泉谷厚壁菌门的多样性不是最近辐射的产物,而是来自古老海洋的谱系隔离的产物。因此,四泉谷不是细菌的加拉帕戈斯群岛,而更像是一个天体生物学的“时间机器”,其中细菌谱系在贫营养环境中幸存下来,这种环境可能与前寒武纪非常相似。关键词:厚壁菌门-四泉谷-前寒武纪-分子定年-西部内陆海道。