Max Planck Institute of Colloids and Interfaces, Science Park Golm, Potsdam, Germany.
PLoS One. 2012;7(8):e43219. doi: 10.1371/journal.pone.0043219. Epub 2012 Aug 21.
In gliding assays, filaments are pulled by molecular motors that are immobilized on a solid surface. By varying the motor density on the surface, one can control the number N of motors that pull simultaneously on a single filament. Here, such gliding assays are studied theoretically using brownian (or Langevin) dynamics simulations and taking the local force balance between motors and filaments as well as the force-dependent velocity of the motors into account. We focus on the filament stepping dynamics and investigate how single motor properties such as stalk elasticity and step size determine the presence or absence of fractional steps of the filaments. We show that each gliding assay can be characterized by a critical motor number, N(c). Because of thermal fluctuations, fractional filament steps are only detectable as long as N < N(c). The corresponding fractional filament step size is l/N where l is the step size of a single motor. We first apply our computational approach to microtubules pulled by kinesin-1 motors. For elastic motor stalks that behave as linear springs with a zero rest length, the critical motor number is found to be N(c) = 4, and the corresponding distributions of the filament step sizes are in good agreement with the available experimental data. In general, the critical motor number N(c) depends on the elastic stalk properties and is reduced to N(c) = 3 for linear springs with a nonzero rest length. Furthermore, N(c) is shown to depend quadratically on the motor step size l. Therefore, gliding assays consisting of actin filaments and myosin-V are predicted to exhibit fractional filament steps up to motor number N = 31. Finally, we show that fractional filament steps are also detectable for a fixed average motor number
在滑行实验中,纤维丝由固定在固体表面上的分子马达拉动。通过改变表面上的马达密度,可以控制同时拉动单根纤维丝的马达数量 N。在此,通过布朗(或朗之万)动力学模拟对这种滑行实验进行了理论研究,并考虑了马达与纤维丝之间的局部力平衡以及马达速度对力的依赖性。我们专注于纤维丝的步进动力学,并研究了单个马达的特性(如茎干弹性和步长)如何决定纤维丝是否存在分数步。我们表明,每个滑行实验都可以通过临界马达数量 N(c)来描述。由于热波动,只要 N < N(c),分数步就可以被检测到。相应的分数步大小为 l/N,其中 l 是单个马达的步长。我们首先将我们的计算方法应用于由 kinesin-1 马达拉动的微管。对于弹性马达茎干,其表现为具有零静止长度的线性弹簧,发现临界马达数量为 N(c) = 4,并且相应的纤维丝步长分布与现有实验数据非常吻合。一般来说,临界马达数量 N(c)取决于弹性茎干特性,对于具有非零静止长度的线性弹簧,N(c)降低到 N(c) = 3。此外,N(c)被证明与马达步长 l 的平方成正比。因此,由肌球蛋白-V 和肌动蛋白丝组成的滑行实验预计会在马达数量 N = 31 以内表现出分数步。最后,我们表明,即使在由基底表面上的马达的表面密度(或覆盖率)确定的平均马达数量