Department of Cellular Therapy and Regenerative Medicine, CSIC-CABIMER, Seville, Spain.
Eur J Hum Genet. 2013 Mar;21(3):338-42. doi: 10.1038/ejhg.2012.158. Epub 2012 Aug 29.
Here we report recruitment of a three-generation Romani (Gypsy) family with autosomal dominant cone-rod dystrophy (adCORD). Involvement of known adCORD genes was excluded by microsatellite (STR) genotyping and linkage analysis. Subsequently, two independent total-genome scans using STR markers and single-nucleotide polymorphisms (SNPs) were performed. Haplotype analysis revealed a single 6.7-Mb novel locus between markers D10S1757 and D10S1782 linked to the disease phenotype on chromosome 10q26. Linkage analysis gave a maximum LOD score of 3.31 for five fully informative STR markers within the linked interval corresponding to the expected maximum in the family. Multipoint linkage analysis of SNP genotypes yielded a maximum parametric linkage score of 2.71 with markers located in the same chromosomal interval. There is no previously mapped CORD locus in this interval, and therefore the data reported here is novel and likely to identify a new gene that may eventually contribute to new knowledge on the pathogenesis of this condition. Sequencing of several candidate genes within the mapped interval led to negative findings in terms of the underlying molecular pathogenesis of the disease in the family. Analysis by comparative genomic hybridization excluded large chromosomal aberrations as causative of adCORD in the pedigree.
我们在此报告一个三世代的罗马尼亚(吉普赛)家族常染色体显性遗传性视锥-视杆营养不良(adCORD)的发病情况。通过微卫星(STR)基因分型和连锁分析排除了已知的 adCORD 基因的参与。随后,使用 STR 标记和单核苷酸多态性(SNP)进行了两次独立的全基因组扫描。单体型分析显示,在 10q26 染色体上,在标记 D10S1757 和 D10S1782 之间存在一个 6.7Mb 的新的单倍型,与疾病表型相关。连锁分析显示,在连锁区间内的五个完全信息 STR 标记的最大 LOD 得分是 3.31,这与家族中的预期最大值一致。SNP 基因型的多点连锁分析得到了一个最大的参数连锁得分 2.71,标记位于相同的染色体区间内。在这个区间内没有以前映射的 CORD 基因座,因此报告的数据是新颖的,可能会识别出一个新的基因,最终可能有助于了解这种疾病的发病机制。对该映射区间内的几个候选基因进行测序,在该家族疾病的潜在分子发病机制方面未发现阳性结果。比较基因组杂交分析排除了大的染色体异常作为该家族 adCORD 的致病原因。